miRNA display CGI


Results 1 - 18 of 18 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
266 5' -62 AC_000008.1 + 11400 0.66 0.237626
Target:  5'- -uGCGGCaUGGCCUgaaucGCGaGCGGuugcuGCGCg -3'
miRNA:   3'- uuCGUCG-ACCGGAa----CGC-CGUCc----CGCG- -5'
266 5' -62 AC_000008.1 + 27463 0.66 0.225368
Target:  5'- -cGCAGCUuGCgg-GCGGCuuucgucacAGGGUGCg -3'
miRNA:   3'- uuCGUCGAcCGgaaCGCCG---------UCCCGCG- -5'
266 5' -62 AC_000008.1 + 10113 0.66 0.218857
Target:  5'- uAAGCAGCUGcGaaUUGCaaaccagggagcgGuGCGGGGUGCa -3'
miRNA:   3'- -UUCGUCGAC-CggAACG-------------C-CGUCCCGCG- -5'
266 5' -62 AC_000008.1 + 10346 0.66 0.21365
Target:  5'- cGGCGGC-GGCUg-GCGGUAGaGGgGCc -3'
miRNA:   3'- uUCGUCGaCCGGaaCGCCGUC-CCgCG- -5'
266 5' -62 AC_000008.1 + 5474 0.67 0.210238
Target:  5'- -cGCGGCgUGGCCcuugGCGcGCAGcuugcccuuggaggaGGCGCc -3'
miRNA:   3'- uuCGUCG-ACCGGaa--CGC-CGUC---------------CCGCG- -5'
266 5' -62 AC_000008.1 + 15064 0.67 0.207989
Target:  5'- cGGCAGCaacaGCa--GUGGCAGcGGCGCg -3'
miRNA:   3'- uUCGUCGac--CGgaaCGCCGUC-CCGCG- -5'
266 5' -62 AC_000008.1 + 26849 0.67 0.206316
Target:  5'- -cGCAGgUGGUCaUGCGcGCccgcgaugccgaagGGGGCGUg -3'
miRNA:   3'- uuCGUCgACCGGaACGC-CG--------------UCCCGCG- -5'
266 5' -62 AC_000008.1 + 12169 0.67 0.202459
Target:  5'- gAGGCAGCUggGGCCggaccuggGCuGGCGGuGGCa- -3'
miRNA:   3'- -UUCGUCGA--CCGGaa------CG-CCGUC-CCGcg -5'
266 5' -62 AC_000008.1 + 20073 0.67 0.193876
Target:  5'- -cGCGGCgagacuaugcccagGGCCUUGUaaacguaggGGCAGGuGCGg -3'
miRNA:   3'- uuCGUCGa-------------CCGGAACG---------CCGUCC-CGCg -5'
266 5' -62 AC_000008.1 + 10249 0.67 0.186628
Target:  5'- aAGGUAGCagUGGCCccaaaGCGGCggAGGGCa- -3'
miRNA:   3'- -UUCGUCG--ACCGGaa---CGCCG--UCCCGcg -5'
266 5' -62 AC_000008.1 + 15965 0.67 0.181599
Target:  5'- -cGCGGCgcgGGCaCUaccGCGcGCccuGGGGCGCg -3'
miRNA:   3'- uuCGUCGa--CCG-GAa--CGC-CG---UCCCGCG- -5'
266 5' -62 AC_000008.1 + 13194 0.68 0.17669
Target:  5'- aGAGCGuGCUGGCCa-GCGuGCAccacccGGCGCu -3'
miRNA:   3'- -UUCGU-CGACCGGaaCGC-CGUc-----CCGCG- -5'
266 5' -62 AC_000008.1 + 11225 0.69 0.149649
Target:  5'- gAGGagGGCgagGGCCUggcGCGGCuAGGaGCGCc -3'
miRNA:   3'- -UUCg-UCGa--CCGGAa--CGCCG-UCC-CGCG- -5'
266 5' -62 AC_000008.1 + 9753 0.69 0.137588
Target:  5'- -cGCGGCUgcugcugauagGGCUgcgGCGGCGGGGgGa -3'
miRNA:   3'- uuCGUCGA-----------CCGGaa-CGCCGUCCCgCg -5'
266 5' -62 AC_000008.1 + 32092 0.7 0.122895
Target:  5'- -uGCAGC-GGCUgaagcgGCGGCGGaGGCuGCa -3'
miRNA:   3'- uuCGUCGaCCGGaa----CGCCGUC-CCG-CG- -5'
266 5' -62 AC_000008.1 + 19690 0.7 0.122895
Target:  5'- uGGGCGGCaGuGCCgggucgGCGGCGGuGGCGa -3'
miRNA:   3'- -UUCGUCGaC-CGGaa----CGCCGUC-CCGCg -5'
266 5' -62 AC_000008.1 + 9570 0.71 0.095013
Target:  5'- uGGCGGggGGCUgccaUGCGGCAGGGauacgGCg -3'
miRNA:   3'- uUCGUCgaCCGGa---ACGCCGUCCCg----CG- -5'
266 5' -62 AC_000008.1 + 24609 1.08 0.000097
Target:  5'- cAAGCAGCUGGCCUUGCGGCAGGGCGCu -3'
miRNA:   3'- -UUCGUCGACCGGAACGCCGUCCCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.