miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2660 3' -54.4 NC_001491.2 + 20370 0.66 0.946419
Target:  5'- ---cCGCGGugGUGgUAGccGCGGUg- -3'
miRNA:   3'- gcuuGCGCCugCACgAUCu-CGCCAau -5'
2660 3' -54.4 NC_001491.2 + 20340 0.66 0.946419
Target:  5'- ---cCGCGGugGUGgUAGccGCGGUg- -3'
miRNA:   3'- gcuuGCGCCugCACgAUCu-CGCCAau -5'
2660 3' -54.4 NC_001491.2 + 20400 0.66 0.937095
Target:  5'- ---cCGCGGugGUGgUAGccgcGGUGGUUGc -3'
miRNA:   3'- gcuuGCGCCugCACgAUC----UCGCCAAU- -5'
2660 3' -54.4 NC_001491.2 + 69862 0.66 0.932068
Target:  5'- gGAugGCGCGGGuc-GCUGGGGCuGGUUGg -3'
miRNA:   3'- gCU--UGCGCCUgcaCGAUCUCG-CCAAU- -5'
2660 3' -54.4 NC_001491.2 + 34895 0.67 0.921277
Target:  5'- aGGACGaGGACcUGCUGG-GCGGa-- -3'
miRNA:   3'- gCUUGCgCCUGcACGAUCuCGCCaau -5'
2660 3' -54.4 NC_001491.2 + 95813 0.67 0.915514
Target:  5'- gGAGCGUGGACGUGaccacGCGGc-- -3'
miRNA:   3'- gCUUGCGCCUGCACgaucuCGCCaau -5'
2660 3' -54.4 NC_001491.2 + 27184 0.68 0.875896
Target:  5'- gGAGCGCGGcagcgagaccGCGUGCgcc-GCGGUg- -3'
miRNA:   3'- gCUUGCGCC----------UGCACGaucuCGCCAau -5'
2660 3' -54.4 NC_001491.2 + 70354 0.69 0.836724
Target:  5'- aGAGCcUGGACGUGCUccAGAaggucGCGGUa- -3'
miRNA:   3'- gCUUGcGCCUGCACGA--UCU-----CGCCAau -5'
2660 3' -54.4 NC_001491.2 + 65517 0.69 0.819669
Target:  5'- gGAGcCGCGGAUGgGCUAGcucuauGGCGGUc- -3'
miRNA:   3'- gCUU-GCGCCUGCaCGAUC------UCGCCAau -5'
2660 3' -54.4 NC_001491.2 + 10106 0.7 0.810875
Target:  5'- gCGGAggcaGCGGACGcGCUccGGAGCGGc-- -3'
miRNA:   3'- -GCUUg---CGCCUGCaCGA--UCUCGCCaau -5'
2660 3' -54.4 NC_001491.2 + 9979 0.7 0.764586
Target:  5'- cCGAGCGgGGACGggGacgGGGGCGGg-- -3'
miRNA:   3'- -GCUUGCgCCUGCa-Cga-UCUCGCCaau -5'
2660 3' -54.4 NC_001491.2 + 21000 0.72 0.653811
Target:  5'- -aGACGUGGACGaGCUAGAGgUGGUa- -3'
miRNA:   3'- gcUUGCGCCUGCaCGAUCUC-GCCAau -5'
2660 3' -54.4 NC_001491.2 + 89170 1.07 0.005588
Target:  5'- uCGAACGCGGACGUGCUAGAGCGGUUAu -3'
miRNA:   3'- -GCUUGCGCCUGCACGAUCUCGCCAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.