miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2660 5' -59.2 NC_001491.2 + 45984 0.67 0.741264
Target:  5'- cGGcgcCCCGCUgGGaUUAUCGCaCGCGCu -3'
miRNA:   3'- -CCau-GGGCGAgCUgAGUGGCG-GCGCG- -5'
2660 5' -59.2 NC_001491.2 + 43416 0.67 0.750607
Target:  5'- --cGCaaGCUCGACgCGCCGCaggaaGCGUc -3'
miRNA:   3'- ccaUGggCGAGCUGaGUGGCGg----CGCG- -5'
2660 5' -59.2 NC_001491.2 + 10138 0.67 0.750607
Target:  5'- cGGgccGCCCGCggaGGcCUgGCCGCgCGUGUa -3'
miRNA:   3'- -CCa--UGGGCGag-CU-GAgUGGCG-GCGCG- -5'
2660 5' -59.2 NC_001491.2 + 32283 0.67 0.759854
Target:  5'- --cGCCCGCggcACUCGCagaaCGCCGCGa -3'
miRNA:   3'- ccaUGGGCGagcUGAGUG----GCGGCGCg -5'
2660 5' -59.2 NC_001491.2 + 3342 0.67 0.768994
Target:  5'- cGGgcCCC-CUCGGCguuguagcgCACCaGCgGCGCc -3'
miRNA:   3'- -CCauGGGcGAGCUGa--------GUGG-CGgCGCG- -5'
2660 5' -59.2 NC_001491.2 + 3470 0.67 0.776226
Target:  5'- --gGCCCGCUCGACcaggucccugaguUCguagagggagaggGCCGCCGUc- -3'
miRNA:   3'- ccaUGGGCGAGCUG-------------AG-------------UGGCGGCGcg -5'
2660 5' -59.2 NC_001491.2 + 4589 0.67 0.778022
Target:  5'- gGGUugGCCCGCUUGcgcuucgacGCUC-CCGCCagaGCc -3'
miRNA:   3'- -CCA--UGGGCGAGC---------UGAGuGGCGGcg-CG- -5'
2660 5' -59.2 NC_001491.2 + 72489 0.67 0.778022
Target:  5'- uGUAcCCCGC-CGAUUgCACCGUCuggguguaGCGCu -3'
miRNA:   3'- cCAU-GGGCGaGCUGA-GUGGCGG--------CGCG- -5'
2660 5' -59.2 NC_001491.2 + 76073 0.68 0.703088
Target:  5'- --aGCCC--UCG-CUC-CCGCCGCGCc -3'
miRNA:   3'- ccaUGGGcgAGCuGAGuGGCGGCGCG- -5'
2660 5' -59.2 NC_001491.2 + 76041 0.68 0.703088
Target:  5'- --aGCCC--UCG-CUC-CCGCCGCGCc -3'
miRNA:   3'- ccaUGGGcgAGCuGAGuGGCGGCGCG- -5'
2660 5' -59.2 NC_001491.2 + 76009 0.68 0.703088
Target:  5'- --aGCCC--UCG-CUC-CCGCCGCGCc -3'
miRNA:   3'- ccaUGGGcgAGCuGAGuGGCGGCGCG- -5'
2660 5' -59.2 NC_001491.2 + 75977 0.68 0.703088
Target:  5'- --aGCCC--UCG-CUC-CCGCCGCGCc -3'
miRNA:   3'- ccaUGGGcgAGCuGAGuGGCGGCGCG- -5'
2660 5' -59.2 NC_001491.2 + 32557 0.68 0.703088
Target:  5'- --cGCCCGCggggaUGGCUUcuCCGCCGgGCc -3'
miRNA:   3'- ccaUGGGCGa----GCUGAGu-GGCGGCgCG- -5'
2660 5' -59.2 NC_001491.2 + 76105 0.68 0.703088
Target:  5'- --aGCCC--UCG-CUC-CCGCCGCGCc -3'
miRNA:   3'- ccaUGGGcgAGCuGAGuGGCGGCGCG- -5'
2660 5' -59.2 NC_001491.2 + 76137 0.68 0.703088
Target:  5'- --aGCCC--UCG-CUC-CCGCCGCGCc -3'
miRNA:   3'- ccaUGGGcgAGCuGAGuGGCGGCGCG- -5'
2660 5' -59.2 NC_001491.2 + 76169 0.68 0.703088
Target:  5'- --aGCCC--UCG-CUC-CCGCCGCGCc -3'
miRNA:   3'- ccaUGGGcgAGCuGAGuGGCGGCGCG- -5'
2660 5' -59.2 NC_001491.2 + 76201 0.68 0.703088
Target:  5'- --aGCCC--UCG-CUC-CCGCCGCGCc -3'
miRNA:   3'- ccaUGGGcgAGCuGAGuGGCGGCGCG- -5'
2660 5' -59.2 NC_001491.2 + 76233 0.68 0.703088
Target:  5'- --aGCCC--UCG-CUC-CCGCCGCGCc -3'
miRNA:   3'- ccaUGGGcgAGCuGAGuGGCGGCGCG- -5'
2660 5' -59.2 NC_001491.2 + 116835 0.68 0.712736
Target:  5'- cGUAgUaGCgaGACgCACCGCCGCGCg -3'
miRNA:   3'- cCAUgGgCGagCUGaGUGGCGGCGCG- -5'
2660 5' -59.2 NC_001491.2 + 27262 0.68 0.693384
Target:  5'- cGUcCCCGCUCcgGACUCcUCGCCGuCGa -3'
miRNA:   3'- cCAuGGGCGAG--CUGAGuGGCGGC-GCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.