Results 41 - 60 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2660 | 5' | -59.2 | NC_001491.2 | + | 5338 | 0.66 | 0.821177 |
Target: 5'- gGGgacGCCgGCUgGGCggcaGCCGCCGgGg -3' miRNA: 3'- -CCa--UGGgCGAgCUGag--UGGCGGCgCg -5' |
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2660 | 5' | -59.2 | NC_001491.2 | + | 60710 | 0.66 | 0.821177 |
Target: 5'- gGGUcCgCCGCaauucUCGuACUCACuCGUgGCGCu -3' miRNA: 3'- -CCAuG-GGCG-----AGC-UGAGUG-GCGgCGCG- -5' |
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2660 | 5' | -59.2 | NC_001491.2 | + | 117954 | 0.66 | 0.829358 |
Target: 5'- aGG-ACaaGCUCGccagcCUCACCGCUGuUGCu -3' miRNA: 3'- -CCaUGggCGAGCu----GAGUGGCGGC-GCG- -5' |
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2660 | 5' | -59.2 | NC_001491.2 | + | 136266 | 0.66 | 0.829358 |
Target: 5'- --aACCCaGCUCGcCUUguaGCCGCUgguauaGCGCg -3' miRNA: 3'- ccaUGGG-CGAGCuGAG---UGGCGG------CGCG- -5' |
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2660 | 5' | -59.2 | NC_001491.2 | + | 55006 | 0.66 | 0.829358 |
Target: 5'- cGUGaaCGCUgCG-CUCGCCGC-GCGCc -3' miRNA: 3'- cCAUggGCGA-GCuGAGUGGCGgCGCG- -5' |
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2660 | 5' | -59.2 | NC_001491.2 | + | 5206 | 0.66 | 0.786928 |
Target: 5'- aGGgcgACCgGgUCGGCcgcgucccCACCGCCGgGUg -3' miRNA: 3'- -CCa--UGGgCgAGCUGa-------GUGGCGGCgCG- -5' |
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2660 | 5' | -59.2 | NC_001491.2 | + | 143587 | 0.66 | 0.786928 |
Target: 5'- -uUGCuCUGCUgcugugcgaagCGuCUCugCGCCGCGUg -3' miRNA: 3'- ccAUG-GGCGA-----------GCuGAGugGCGGCGCG- -5' |
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2660 | 5' | -59.2 | NC_001491.2 | + | 3709 | 0.68 | 0.72232 |
Target: 5'- uGGUcCCCGgagCGGC-CGCgGCCGCGg -3' miRNA: 3'- -CCAuGGGCga-GCUGaGUGgCGGCGCg -5' |
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2660 | 5' | -59.2 | NC_001491.2 | + | 33391 | 0.67 | 0.731832 |
Target: 5'- cGGcUACCCgGCccaGGC-CGCCGCUGcCGCg -3' miRNA: 3'- -CC-AUGGG-CGag-CUGaGUGGCGGC-GCG- -5' |
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2660 | 5' | -59.2 | NC_001491.2 | + | 8580 | 0.67 | 0.741264 |
Target: 5'- cGUGCCCGCgaGGCUCcCCGgCG-GCu -3' miRNA: 3'- cCAUGGGCGagCUGAGuGGCgGCgCG- -5' |
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2660 | 5' | -59.2 | NC_001491.2 | + | 35650 | 0.67 | 0.741264 |
Target: 5'- uGUACCuCGCcugCGGC-CGgCGCgGCGCu -3' miRNA: 3'- cCAUGG-GCGa--GCUGaGUgGCGgCGCG- -5' |
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2660 | 5' | -59.2 | NC_001491.2 | + | 45984 | 0.67 | 0.741264 |
Target: 5'- cGGcgcCCCGCUgGGaUUAUCGCaCGCGCu -3' miRNA: 3'- -CCau-GGGCGAgCUgAGUGGCG-GCGCG- -5' |
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2660 | 5' | -59.2 | NC_001491.2 | + | 43416 | 0.67 | 0.750607 |
Target: 5'- --cGCaaGCUCGACgCGCCGCaggaaGCGUc -3' miRNA: 3'- ccaUGggCGAGCUGaGUGGCGg----CGCG- -5' |
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2660 | 5' | -59.2 | NC_001491.2 | + | 10138 | 0.67 | 0.750607 |
Target: 5'- cGGgccGCCCGCggaGGcCUgGCCGCgCGUGUa -3' miRNA: 3'- -CCa--UGGGCGag-CU-GAgUGGCG-GCGCG- -5' |
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2660 | 5' | -59.2 | NC_001491.2 | + | 32283 | 0.67 | 0.759854 |
Target: 5'- --cGCCCGCggcACUCGCagaaCGCCGCGa -3' miRNA: 3'- ccaUGGGCGagcUGAGUG----GCGGCGCg -5' |
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2660 | 5' | -59.2 | NC_001491.2 | + | 3342 | 0.67 | 0.768994 |
Target: 5'- cGGgcCCC-CUCGGCguuguagcgCACCaGCgGCGCc -3' miRNA: 3'- -CCauGGGcGAGCUGa--------GUGG-CGgCGCG- -5' |
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2660 | 5' | -59.2 | NC_001491.2 | + | 3470 | 0.67 | 0.776226 |
Target: 5'- --gGCCCGCUCGACcaggucccugaguUCguagagggagaggGCCGCCGUc- -3' miRNA: 3'- ccaUGGGCGAGCUG-------------AG-------------UGGCGGCGcg -5' |
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2660 | 5' | -59.2 | NC_001491.2 | + | 4589 | 0.67 | 0.778022 |
Target: 5'- gGGUugGCCCGCUUGcgcuucgacGCUC-CCGCCagaGCc -3' miRNA: 3'- -CCA--UGGGCGAGC---------UGAGuGGCGGcg-CG- -5' |
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2660 | 5' | -59.2 | NC_001491.2 | + | 72489 | 0.67 | 0.778022 |
Target: 5'- uGUAcCCCGC-CGAUUgCACCGUCuggguguaGCGCu -3' miRNA: 3'- cCAU-GGGCGaGCUGA-GUGGCGG--------CGCG- -5' |
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2660 | 5' | -59.2 | NC_001491.2 | + | 82299 | 0.66 | 0.786928 |
Target: 5'- -cUACUaCGCUCGACgaucaaCACCaucaCCGCGCu -3' miRNA: 3'- ccAUGG-GCGAGCUGa-----GUGGc---GGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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