miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26600 3' -55.9 NC_005357.1 + 5358 0.66 0.600434
Target:  5'- uGG-CGACaGCCaacaUGCUCGA-CAGGUGCg -3'
miRNA:   3'- -CCgGCUG-CGGc---ACGAGUUcGUCUACG- -5'
26600 3' -55.9 NC_005357.1 + 9320 0.66 0.600434
Target:  5'- uGG-CGGCGCaCGUcgGCgcggCGGGCGGcgGCa -3'
miRNA:   3'- -CCgGCUGCG-GCA--CGa---GUUCGUCuaCG- -5'
26600 3' -55.9 NC_005357.1 + 4394 0.66 0.600434
Target:  5'- cGCCGucGCGCCGgGcCUUGAGCGuGcgGCa -3'
miRNA:   3'- cCGGC--UGCGGCaC-GAGUUCGU-CuaCG- -5'
26600 3' -55.9 NC_005357.1 + 29740 0.66 0.5971
Target:  5'- cGGCC-ACGCCGUagaacucggccucgGCUgcugcCAGGCGcGUGCg -3'
miRNA:   3'- -CCGGcUGCGGCA--------------CGA-----GUUCGUcUACG- -5'
26600 3' -55.9 NC_005357.1 + 1533 0.66 0.589331
Target:  5'- aGCCGAUGCCGUuCUU--GUGGAUGa -3'
miRNA:   3'- cCGGCUGCGGCAcGAGuuCGUCUACg -5'
26600 3' -55.9 NC_005357.1 + 31259 0.66 0.589331
Target:  5'- cGGCCGAccagcgcaCGCaaCGUGCgCAGGCGGcccaGCa -3'
miRNA:   3'- -CCGGCU--------GCG--GCACGaGUUCGUCua--CG- -5'
26600 3' -55.9 NC_005357.1 + 35011 0.66 0.589331
Target:  5'- uGGCCGGCcauCCGgugcccgGCuUCAAGCuGGUGg -3'
miRNA:   3'- -CCGGCUGc--GGCa------CG-AGUUCGuCUACg -5'
26600 3' -55.9 NC_005357.1 + 616 0.66 0.586006
Target:  5'- cGGCCagcaGCGCCGUggacacggcguccgGCgUCGAGUcGGUGCc -3'
miRNA:   3'- -CCGGc---UGCGGCA--------------CG-AGUUCGuCUACG- -5'
26600 3' -55.9 NC_005357.1 + 15563 0.66 0.578264
Target:  5'- aGGUCaauGGCGCCGUcagugacgacGCgcu-GCGGAUGCa -3'
miRNA:   3'- -CCGG---CUGCGGCA----------CGaguuCGUCUACG- -5'
26600 3' -55.9 NC_005357.1 + 18164 0.66 0.578264
Target:  5'- -uCCGGCGCCacGCUCAAGguGGcaaGCc -3'
miRNA:   3'- ccGGCUGCGGcaCGAGUUCguCUa--CG- -5'
26600 3' -55.9 NC_005357.1 + 21298 0.67 0.567243
Target:  5'- cGGUCGGCGUCGaacuUGUcgagcacuUCGGGCuuGAUGCc -3'
miRNA:   3'- -CCGGCUGCGGC----ACG--------AGUUCGu-CUACG- -5'
26600 3' -55.9 NC_005357.1 + 20513 0.67 0.567243
Target:  5'- aGCCGguacACGCCG-GCUCGuuccagaaAGCGccacacGAUGCg -3'
miRNA:   3'- cCGGC----UGCGGCaCGAGU--------UCGU------CUACG- -5'
26600 3' -55.9 NC_005357.1 + 8931 0.67 0.567243
Target:  5'- aGCgGugGCCGUGCcggauUCGccAGCGGuggccGUGCc -3'
miRNA:   3'- cCGgCugCGGCACG-----AGU--UCGUC-----UACG- -5'
26600 3' -55.9 NC_005357.1 + 29318 0.67 0.567243
Target:  5'- uGGCCGGCaacCCGgaacgGCUCAAGau--UGCg -3'
miRNA:   3'- -CCGGCUGc--GGCa----CGAGUUCgucuACG- -5'
26600 3' -55.9 NC_005357.1 + 6736 0.67 0.566144
Target:  5'- cGCUGGgcCGCCGcGCUCAauAGCGGAaaggucuuuaguuUGCc -3'
miRNA:   3'- cCGGCU--GCGGCaCGAGU--UCGUCU-------------ACG- -5'
26600 3' -55.9 NC_005357.1 + 11912 0.67 0.548636
Target:  5'- uGGUCGagaagcuGCGCCaccucGUGCUCAaccucgacgacuuucAGCAGGUGa -3'
miRNA:   3'- -CCGGC-------UGCGG-----CACGAGU---------------UCGUCUACg -5'
26600 3' -55.9 NC_005357.1 + 32504 0.67 0.545371
Target:  5'- aGGCCGagaacuccGCGcCCGUGCaggcuGguGAUGCc -3'
miRNA:   3'- -CCGGC--------UGC-GGCACGaguu-CguCUACG- -5'
26600 3' -55.9 NC_005357.1 + 11600 0.67 0.545371
Target:  5'- cGGCUGGcCGCCGgGCagCAgugccAGCGGAaGCa -3'
miRNA:   3'- -CCGGCU-GCGGCaCGa-GU-----UCGUCUaCG- -5'
26600 3' -55.9 NC_005357.1 + 4363 0.67 0.545371
Target:  5'- cGGCCGGa--CGg---CAGGCGGAUGCg -3'
miRNA:   3'- -CCGGCUgcgGCacgaGUUCGUCUACG- -5'
26600 3' -55.9 NC_005357.1 + 39039 0.67 0.534537
Target:  5'- uGGCCG-CGUguggGUGCUCAAGaaauCAGAUaGCu -3'
miRNA:   3'- -CCGGCuGCGg---CACGAGUUC----GUCUA-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.