Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26600 | 5' | -55.5 | NC_005357.1 | + | 35738 | 1.12 | 0.000415 |
Target: 5'- aCAAGGUGUGCCUGCACGAUGGCGACCu -3' miRNA: 3'- -GUUCCACACGGACGUGCUACCGCUGG- -5' |
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26600 | 5' | -55.5 | NC_005357.1 | + | 26603 | 0.77 | 0.143145 |
Target: 5'- -cGGcGUGUucgaGuCCUGCGCGGUGGUGGCCg -3' miRNA: 3'- guUC-CACA----C-GGACGUGCUACCGCUGG- -5' |
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26600 | 5' | -55.5 | NC_005357.1 | + | 18376 | 0.76 | 0.151433 |
Target: 5'- gCGAGGUuggccuUGCCgaugGCGcCGGUGGCGGCCa -3' miRNA: 3'- -GUUCCAc-----ACGGa---CGU-GCUACCGCUGG- -5' |
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26600 | 5' | -55.5 | NC_005357.1 | + | 33756 | 0.74 | 0.214294 |
Target: 5'- cCGAGGUGcgcgcggcacgcaaUGCCgaccGCGCGAUgaaggccGGCGACCu -3' miRNA: 3'- -GUUCCAC--------------ACGGa---CGUGCUA-------CCGCUGG- -5' |
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26600 | 5' | -55.5 | NC_005357.1 | + | 11348 | 0.73 | 0.267738 |
Target: 5'- -cAGGUcuUGCa-GUACGGUGGCGACCu -3' miRNA: 3'- guUCCAc-ACGgaCGUGCUACCGCUGG- -5' |
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26600 | 5' | -55.5 | NC_005357.1 | + | 16799 | 0.7 | 0.37976 |
Target: 5'- cCGAGGUGgacGCgCUGC----UGGCGACCg -3' miRNA: 3'- -GUUCCACa--CG-GACGugcuACCGCUGG- -5' |
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26600 | 5' | -55.5 | NC_005357.1 | + | 369 | 0.7 | 0.38887 |
Target: 5'- -cGGGUGUgcuugGCCUGC-CGAUugaGcGCGGCCa -3' miRNA: 3'- guUCCACA-----CGGACGuGCUA---C-CGCUGG- -5' |
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26600 | 5' | -55.5 | NC_005357.1 | + | 35963 | 0.69 | 0.426707 |
Target: 5'- --cGGcGUGCaguucCUGCGCGAcGGCGACg -3' miRNA: 3'- guuCCaCACG-----GACGUGCUaCCGCUGg -5' |
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26600 | 5' | -55.5 | NC_005357.1 | + | 32914 | 0.69 | 0.437489 |
Target: 5'- --cGGccacgGCCUGCACGGcugcuguucggccagGGCGACCa -3' miRNA: 3'- guuCCaca--CGGACGUGCUa--------------CCGCUGG- -5' |
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26600 | 5' | -55.5 | NC_005357.1 | + | 17054 | 0.69 | 0.456475 |
Target: 5'- aAAGGgcuucugGcGCCUGCcCGGUGGcCGGCUa -3' miRNA: 3'- gUUCCa------CaCGGACGuGCUACC-GCUGG- -5' |
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26600 | 5' | -55.5 | NC_005357.1 | + | 34506 | 0.68 | 0.497825 |
Target: 5'- gAAGGUGgacGCCgagcGCaACGAgcagcUGGCGAUCu -3' miRNA: 3'- gUUCCACa--CGGa---CG-UGCU-----ACCGCUGG- -5' |
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26600 | 5' | -55.5 | NC_005357.1 | + | 17464 | 0.68 | 0.497825 |
Target: 5'- -cAGGUGccacgccaggGCCUGCACGAacaGCGGCg -3' miRNA: 3'- guUCCACa---------CGGACGUGCUac-CGCUGg -5' |
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26600 | 5' | -55.5 | NC_005357.1 | + | 34205 | 0.68 | 0.508427 |
Target: 5'- aCGAGGgcacgGCCgcGCACGAacUGGCcGCCa -3' miRNA: 3'- -GUUCCaca--CGGa-CGUGCU--ACCGcUGG- -5' |
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26600 | 5' | -55.5 | NC_005357.1 | + | 27992 | 0.67 | 0.550612 |
Target: 5'- -cAGGUuucgcccaacacgGUGCCgcagGCGCGccUGGCGACg -3' miRNA: 3'- guUCCA-------------CACGGa---CGUGCu-ACCGCUGg -5' |
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26600 | 5' | -55.5 | NC_005357.1 | + | 40410 | 0.67 | 0.562713 |
Target: 5'- --cGGUaUGCCgGUGCuGGUGGCGuACCa -3' miRNA: 3'- guuCCAcACGGaCGUG-CUACCGC-UGG- -5' |
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26600 | 5' | -55.5 | NC_005357.1 | + | 25893 | 0.66 | 0.618434 |
Target: 5'- gCAAGGcG-GCCUGUACGGcuauaucGGCcaGACCa -3' miRNA: 3'- -GUUCCaCaCGGACGUGCUa------CCG--CUGG- -5' |
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26600 | 5' | -55.5 | NC_005357.1 | + | 5976 | 0.66 | 0.618434 |
Target: 5'- uCAAGGUGgauucacaccGUCUGCGuCGcucaaaAUGGCGACg -3' miRNA: 3'- -GUUCCACa---------CGGACGU-GC------UACCGCUGg -5' |
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26600 | 5' | -55.5 | NC_005357.1 | + | 13471 | 0.66 | 0.628531 |
Target: 5'- --cGGUGUcgggcauGaCCUGgGCGAUGcCGACCg -3' miRNA: 3'- guuCCACA-------C-GGACgUGCUACcGCUGG- -5' |
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26600 | 5' | -55.5 | NC_005357.1 | + | 29747 | 0.66 | 0.63751 |
Target: 5'- uCAAGGcGgGCCUcgacacgcgccugcGCAUGAUgGGCGACg -3' miRNA: 3'- -GUUCCaCaCGGA--------------CGUGCUA-CCGCUGg -5' |
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26600 | 5' | -55.5 | NC_005357.1 | + | 9004 | 0.66 | 0.639754 |
Target: 5'- --cGGUG-GCCgUGcCGCGAUagccagcGGUGGCCg -3' miRNA: 3'- guuCCACaCGG-AC-GUGCUA-------CCGCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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