Results 21 - 40 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26601 | 3' | -53.7 | NC_005357.1 | + | 40206 | 0.67 | 0.703967 |
Target: 5'- cCGCCUGCUGcG-CGUggugcuaccCGACGAGGGCg -3' miRNA: 3'- cGCGGGCGAC-CaGUA---------GCUGUUUCUGg -5' |
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26601 | 3' | -53.7 | NC_005357.1 | + | 25142 | 0.67 | 0.703967 |
Target: 5'- cGCGCCCGC-GG-CGcCGGCuucguGGACg -3' miRNA: 3'- -CGCGGGCGaCCaGUaGCUGuu---UCUGg -5' |
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26601 | 3' | -53.7 | NC_005357.1 | + | 28555 | 0.67 | 0.703967 |
Target: 5'- uGCGgCCGCcGGcCAUCGcggcgcgcACGucGGCCa -3' miRNA: 3'- -CGCgGGCGaCCaGUAGC--------UGUuuCUGG- -5' |
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26601 | 3' | -53.7 | NC_005357.1 | + | 39187 | 0.67 | 0.700662 |
Target: 5'- aGUGCCUGCUcGGgcaggucgaauuauUCAUCGugGcGGGCa -3' miRNA: 3'- -CGCGGGCGA-CC--------------AGUAGCugUuUCUGg -5' |
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26601 | 3' | -53.7 | NC_005357.1 | + | 20454 | 0.67 | 0.692924 |
Target: 5'- gGCcCUCGUUccGGUUcccuUCGGCGAAGGCCa -3' miRNA: 3'- -CGcGGGCGA--CCAGu---AGCUGUUUCUGG- -5' |
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26601 | 3' | -53.7 | NC_005357.1 | + | 18865 | 0.67 | 0.681819 |
Target: 5'- cCGCCCGCaccugccGGcgaUGUCGGCcGAGGCCa -3' miRNA: 3'- cGCGGGCGa------CCa--GUAGCUGuUUCUGG- -5' |
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26601 | 3' | -53.7 | NC_005357.1 | + | 21117 | 0.67 | 0.681819 |
Target: 5'- uUGCuuGCUGG-UAUCGACGcuGcCCa -3' miRNA: 3'- cGCGggCGACCaGUAGCUGUuuCuGG- -5' |
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26601 | 3' | -53.7 | NC_005357.1 | + | 860 | 0.67 | 0.681819 |
Target: 5'- -gGCCUGUaUGGcUUucguuucccuAUCGACGAGGGCCg -3' miRNA: 3'- cgCGGGCG-ACC-AG----------UAGCUGUUUCUGG- -5' |
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26601 | 3' | -53.7 | NC_005357.1 | + | 32517 | 0.67 | 0.670665 |
Target: 5'- cGCGCCCgugcagGCUGGUgAUgcCGGCcAGGAUg -3' miRNA: 3'- -CGCGGG------CGACCAgUA--GCUGuUUCUGg -5' |
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26601 | 3' | -53.7 | NC_005357.1 | + | 15385 | 0.67 | 0.670665 |
Target: 5'- cGCGUCCGCgugcGGgc--CGGCGAAGAUg -3' miRNA: 3'- -CGCGGGCGa---CCaguaGCUGUUUCUGg -5' |
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26601 | 3' | -53.7 | NC_005357.1 | + | 27491 | 0.67 | 0.670665 |
Target: 5'- uCGCCgaGUUGGgcgcgcaGUCGGCAcuuGAGGCCg -3' miRNA: 3'- cGCGGg-CGACCag-----UAGCUGU---UUCUGG- -5' |
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26601 | 3' | -53.7 | NC_005357.1 | + | 13576 | 0.67 | 0.670665 |
Target: 5'- gGCGCggCGCUGGgacagCuUCGGCAAGuccGGCCg -3' miRNA: 3'- -CGCGg-GCGACCa----GuAGCUGUUU---CUGG- -5' |
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26601 | 3' | -53.7 | NC_005357.1 | + | 12768 | 0.68 | 0.648254 |
Target: 5'- cGCGCCCuGCUGGgCAaCGGCu---ACCu -3' miRNA: 3'- -CGCGGG-CGACCaGUaGCUGuuucUGG- -5' |
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26601 | 3' | -53.7 | NC_005357.1 | + | 4970 | 0.68 | 0.648254 |
Target: 5'- uCGCgCUGCUGGUCAguuccaGACGuuGGCg -3' miRNA: 3'- cGCG-GGCGACCAGUag----CUGUuuCUGg -5' |
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26601 | 3' | -53.7 | NC_005357.1 | + | 30426 | 0.68 | 0.648254 |
Target: 5'- cCGCgCUGCUGGcCGaCGugGAaaAGGCCa -3' miRNA: 3'- cGCG-GGCGACCaGUaGCugUU--UCUGG- -5' |
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26601 | 3' | -53.7 | NC_005357.1 | + | 13758 | 0.68 | 0.648254 |
Target: 5'- cGCGCCgCGCUGGcgaggcCGcCGGCAccGAUCu -3' miRNA: 3'- -CGCGG-GCGACCa-----GUaGCUGUuuCUGG- -5' |
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26601 | 3' | -53.7 | NC_005357.1 | + | 5056 | 0.68 | 0.647132 |
Target: 5'- gGCGaCCGCUGcauugauGUUGUCGGCAuugccGACCg -3' miRNA: 3'- -CGCgGGCGAC-------CAGUAGCUGUuu---CUGG- -5' |
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26601 | 3' | -53.7 | NC_005357.1 | + | 37587 | 0.68 | 0.63702 |
Target: 5'- gGCaaCCuaUGGUCAUCGACuacggcGACCu -3' miRNA: 3'- -CGcgGGcgACCAGUAGCUGuuu---CUGG- -5' |
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26601 | 3' | -53.7 | NC_005357.1 | + | 34380 | 0.68 | 0.63702 |
Target: 5'- gGCGCgCGUcaUGGaCggCGGCAAGGACg -3' miRNA: 3'- -CGCGgGCG--ACCaGuaGCUGUUUCUGg -5' |
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26601 | 3' | -53.7 | NC_005357.1 | + | 19618 | 0.68 | 0.63702 |
Target: 5'- cCGUCCGg-GGUCAUgcgggccgCGACAucGGCCa -3' miRNA: 3'- cGCGGGCgaCCAGUA--------GCUGUuuCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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