Results 21 - 40 of 164 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26602 | 3' | -51.7 | NC_005357.1 | + | 3800 | 0.66 | 0.804222 |
Target: 5'- gGuCGGGCAGcAUGACcagGCGGUcggGGGCGCc -3' miRNA: 3'- gC-GUCCGUU-UGUUGa--UGCCG---UUCGCG- -5' |
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26602 | 3' | -51.7 | NC_005357.1 | + | 39567 | 0.66 | 0.804222 |
Target: 5'- uGCAuGGCucuGCcaacGCUACGGCuuGGCGg -3' miRNA: 3'- gCGU-CCGuu-UGu---UGAUGCCGu-UCGCg -5' |
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26602 | 3' | -51.7 | NC_005357.1 | + | 30515 | 0.66 | 0.804222 |
Target: 5'- gGCAcGGCGGugAAgUAUcuGGUcAGCGCa -3' miRNA: 3'- gCGU-CCGUUugUUgAUG--CCGuUCGCG- -5' |
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26602 | 3' | -51.7 | NC_005357.1 | + | 27857 | 0.66 | 0.804222 |
Target: 5'- cCGCcGGCAu-CAGCc-CGGUAGGgGCg -3' miRNA: 3'- -GCGuCCGUuuGUUGauGCCGUUCgCG- -5' |
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26602 | 3' | -51.7 | NC_005357.1 | + | 30398 | 0.66 | 0.803218 |
Target: 5'- aCGCuGGGCAAGaccucgcCGGCcACGGCc-GCGCu -3' miRNA: 3'- -GCG-UCCGUUU-------GUUGaUGCCGuuCGCG- -5' |
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26602 | 3' | -51.7 | NC_005357.1 | + | 10615 | 0.66 | 0.801201 |
Target: 5'- gCGCAGGUucAugGGCUucgccuuucguuaaAUGcGUAGGCGCa -3' miRNA: 3'- -GCGUCCGu-UugUUGA--------------UGC-CGUUCGCG- -5' |
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26602 | 3' | -51.7 | NC_005357.1 | + | 9214 | 0.67 | 0.78376 |
Target: 5'- gGCGcGGCGcACGuuCUGCGGC--GCGCc -3' miRNA: 3'- gCGU-CCGUuUGUu-GAUGCCGuuCGCG- -5' |
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26602 | 3' | -51.7 | NC_005357.1 | + | 28590 | 0.67 | 0.78376 |
Target: 5'- gGCAGGC--GCAAUUGCugGGCAAaucCGCc -3' miRNA: 3'- gCGUCCGuuUGUUGAUG--CCGUUc--GCG- -5' |
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26602 | 3' | -51.7 | NC_005357.1 | + | 5319 | 0.67 | 0.78376 |
Target: 5'- cCGUAGGCcGcgagcacguggcGCAGC-AUGGCAucGCGCu -3' miRNA: 3'- -GCGUCCGuU------------UGUUGaUGCCGUu-CGCG- -5' |
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26602 | 3' | -51.7 | NC_005357.1 | + | 6284 | 0.67 | 0.780628 |
Target: 5'- gGCAGGcCGAACAGgUcgcccacgacauugACGGCAgcuuugcggaaAGCGUc -3' miRNA: 3'- gCGUCC-GUUUGUUgA--------------UGCCGU-----------UCGCG- -5' |
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26602 | 3' | -51.7 | NC_005357.1 | + | 25767 | 0.67 | 0.773261 |
Target: 5'- uGCuGGGCGgcGGCAACgAUGGCcgcgauGCGCg -3' miRNA: 3'- gCG-UCCGU--UUGUUGaUGCCGuu----CGCG- -5' |
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26602 | 3' | -51.7 | NC_005357.1 | + | 21253 | 0.67 | 0.773261 |
Target: 5'- aGCAGGCcgcGCAGCa--GGCc-GCGCu -3' miRNA: 3'- gCGUCCGuu-UGUUGaugCCGuuCGCG- -5' |
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26602 | 3' | -51.7 | NC_005357.1 | + | 18038 | 0.67 | 0.772202 |
Target: 5'- uGUcGGCGGGCuGCUugGGgGccuuaccGGCGCg -3' miRNA: 3'- gCGuCCGUUUGuUGAugCCgU-------UCGCG- -5' |
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26602 | 3' | -51.7 | NC_005357.1 | + | 4194 | 0.67 | 0.772202 |
Target: 5'- gGCGGGCAuguuggccgcgAGCAcgucgcgGCuUGCGGCuuGCGUa -3' miRNA: 3'- gCGUCCGU-----------UUGU-------UG-AUGCCGuuCGCG- -5' |
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26602 | 3' | -51.7 | NC_005357.1 | + | 26669 | 0.67 | 0.762602 |
Target: 5'- uCGCAccauuGGC-GGCAACgaggUGCGGUaugucGAGCGCa -3' miRNA: 3'- -GCGU-----CCGuUUGUUG----AUGCCG-----UUCGCG- -5' |
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26602 | 3' | -51.7 | NC_005357.1 | + | 17028 | 0.67 | 0.762602 |
Target: 5'- gGC-GGCAcgGACGGCUACaacucgcaaaagGGCuucuGGCGCc -3' miRNA: 3'- gCGuCCGU--UUGUUGAUG------------CCGu---UCGCG- -5' |
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26602 | 3' | -51.7 | NC_005357.1 | + | 2234 | 0.67 | 0.751794 |
Target: 5'- gCGCA-GCAGGCGGCgcgUGGCc-GCGCa -3' miRNA: 3'- -GCGUcCGUUUGUUGau-GCCGuuCGCG- -5' |
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26602 | 3' | -51.7 | NC_005357.1 | + | 16225 | 0.67 | 0.751794 |
Target: 5'- aGCA-GC-AGCAACU-CGGUGAGCGg -3' miRNA: 3'- gCGUcCGuUUGUUGAuGCCGUUCGCg -5' |
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26602 | 3' | -51.7 | NC_005357.1 | + | 28307 | 0.67 | 0.751794 |
Target: 5'- cCGCuGGCcGACGAgUACGGCGauaaccucaagaAGCa- -3' miRNA: 3'- -GCGuCCGuUUGUUgAUGCCGU------------UCGcg -5' |
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26602 | 3' | -51.7 | NC_005357.1 | + | 37266 | 0.67 | 0.751794 |
Target: 5'- nGguGGCAGGCAA-UGCGGCAAa--- -3' miRNA: 3'- gCguCCGUUUGUUgAUGCCGUUcgcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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