Results 1 - 20 of 38 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26602 | 5' | -60 | NC_005357.1 | + | 17745 | 0.66 | 0.389871 |
Target: 5'- uGGUg-GCGaaaccccaGGUGUGCAGUUCgaGCa -3' miRNA: 3'- cCCGgaCGCg-------CCGCACGUCAAGgaCG- -5' |
|||||||
26602 | 5' | -60 | NC_005357.1 | + | 938 | 0.68 | 0.292023 |
Target: 5'- gGGGCCgaucuguccguccUGCGCGGUGcccacgGCAG--CUUGCa -3' miRNA: 3'- -CCCGG-------------ACGCGCCGCa-----CGUCaaGGACG- -5' |
|||||||
26602 | 5' | -60 | NC_005357.1 | + | 26046 | 0.68 | 0.307531 |
Target: 5'- -aGCCcGCGCGGCGgGCGcGcUCCaUGCg -3' miRNA: 3'- ccCGGaCGCGCCGCaCGU-CaAGG-ACG- -5' |
|||||||
26602 | 5' | -60 | NC_005357.1 | + | 448 | 0.67 | 0.322878 |
Target: 5'- uGGGCugCUGCGCGGCcagcuUGCGGgcgCUGUc -3' miRNA: 3'- -CCCG--GACGCGCCGc----ACGUCaagGACG- -5' |
|||||||
26602 | 5' | -60 | NC_005357.1 | + | 18294 | 0.67 | 0.346957 |
Target: 5'- cGGGCCggugGCGaCGGUGUaauagacacgGCAGUagCgGCg -3' miRNA: 3'- -CCCGGa---CGC-GCCGCA----------CGUCAagGaCG- -5' |
|||||||
26602 | 5' | -60 | NC_005357.1 | + | 28402 | 0.67 | 0.346957 |
Target: 5'- -cGCCggcgGCGCGGCGccaGUAGaugCCUGUc -3' miRNA: 3'- ccCGGa---CGCGCCGCa--CGUCaa-GGACG- -5' |
|||||||
26602 | 5' | -60 | NC_005357.1 | + | 32920 | 0.67 | 0.346957 |
Target: 5'- cGGCCUGCaCGGC-UGCuGUUCg-GCc -3' miRNA: 3'- cCCGGACGcGCCGcACGuCAAGgaCG- -5' |
|||||||
26602 | 5' | -60 | NC_005357.1 | + | 25829 | 0.66 | 0.372294 |
Target: 5'- cGGGCCgccguugGCGcCGGU---CAGUUCCaUGCu -3' miRNA: 3'- -CCCGGa------CGC-GCCGcacGUCAAGG-ACG- -5' |
|||||||
26602 | 5' | -60 | NC_005357.1 | + | 15378 | 0.66 | 0.381015 |
Target: 5'- cGGUgaGCGCGuccGCGUGCGGg-CCgGCg -3' miRNA: 3'- cCCGgaCGCGC---CGCACGUCaaGGaCG- -5' |
|||||||
26602 | 5' | -60 | NC_005357.1 | + | 21179 | 0.69 | 0.25823 |
Target: 5'- cGGCCugcUGCGCGGCcUGCuGcuggUCUGCg -3' miRNA: 3'- cCCGG---ACGCGCCGcACGuCaa--GGACG- -5' |
|||||||
26602 | 5' | -60 | NC_005357.1 | + | 18055 | 0.69 | 0.25823 |
Target: 5'- gGGGCCUuaccgGCGCGGgGUGCGugcuGggCC-GCc -3' miRNA: 3'- -CCCGGA-----CGCGCCgCACGU----CaaGGaCG- -5' |
|||||||
26602 | 5' | -60 | NC_005357.1 | + | 14345 | 0.7 | 0.215582 |
Target: 5'- cGGGCCUGC-UGGUucGCGGUgUCCUGg -3' miRNA: 3'- -CCCGGACGcGCCGcaCGUCA-AGGACg -5' |
|||||||
26602 | 5' | -60 | NC_005357.1 | + | 37294 | 0.77 | 0.062078 |
Target: 5'- -cGCCUGCGCGGCacguUGCAGUUCaacgGCg -3' miRNA: 3'- ccCGGACGCGCCGc---ACGUCAAGga--CG- -5' |
|||||||
26602 | 5' | -60 | NC_005357.1 | + | 11516 | 0.77 | 0.069603 |
Target: 5'- -cGCCUGCGCuGGCGUG-AGgcCCUGCg -3' miRNA: 3'- ccCGGACGCG-CCGCACgUCaaGGACG- -5' |
|||||||
26602 | 5' | -60 | NC_005357.1 | + | 38893 | 0.75 | 0.092441 |
Target: 5'- cGGGaCUGCGCGGUGUGCGG---CUGUa -3' miRNA: 3'- -CCCgGACGCGCCGCACGUCaagGACG- -5' |
|||||||
26602 | 5' | -60 | NC_005357.1 | + | 6242 | 0.75 | 0.095081 |
Target: 5'- aGGGCCUGCacgcCGGUaacgGUGCGGUUgaUCUGCg -3' miRNA: 3'- -CCCGGACGc---GCCG----CACGUCAA--GGACG- -5' |
|||||||
26602 | 5' | -60 | NC_005357.1 | + | 14899 | 0.74 | 0.113744 |
Target: 5'- aGGGUCUGCGCGGCGaucUGCugcuggccggccucaAGUgccgaCUGCg -3' miRNA: 3'- -CCCGGACGCGCCGC---ACG---------------UCAag---GACG- -5' |
|||||||
26602 | 5' | -60 | NC_005357.1 | + | 9201 | 0.72 | 0.152321 |
Target: 5'- uGGCCUGCuCGGCGgcGCGGcgcacgUUCUGCg -3' miRNA: 3'- cCCGGACGcGCCGCa-CGUCa-----AGGACG- -5' |
|||||||
26602 | 5' | -60 | NC_005357.1 | + | 8143 | 0.71 | 0.199229 |
Target: 5'- uGGGCgUGCGgguguCGGCGcUGC-GUcCCUGCg -3' miRNA: 3'- -CCCGgACGC-----GCCGC-ACGuCAaGGACG- -5' |
|||||||
26602 | 5' | -60 | NC_005357.1 | + | 11423 | 0.7 | 0.215582 |
Target: 5'- cGGCgaGC-CGGCGUGCAGgucgCCgauaagGCg -3' miRNA: 3'- cCCGgaCGcGCCGCACGUCaa--GGa-----CG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home