Results 41 - 60 of 64 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26603 | 5' | -52.9 | NC_005357.1 | + | 14609 | 0.68 | 0.645082 |
Target: 5'- cCACCGcGGGCAGCGCgCGcgagGACgUGCUg -3' miRNA: 3'- uGUGGC-UCUGUUGCG-GUa---CUGgAUGA- -5' |
|||||||
26603 | 5' | -52.9 | NC_005357.1 | + | 26001 | 0.68 | 0.645082 |
Target: 5'- aACGCCGccGGCGAUuaccccgcgGCCGUGuCCUACUu -3' miRNA: 3'- -UGUGGCu-CUGUUG---------CGGUACuGGAUGA- -5' |
|||||||
26603 | 5' | -52.9 | NC_005357.1 | + | 32584 | 0.68 | 0.633642 |
Target: 5'- gACACCGc--CGACGCUGUGACCaaGCUg -3' miRNA: 3'- -UGUGGCucuGUUGCGGUACUGGa-UGA- -5' |
|||||||
26603 | 5' | -52.9 | NC_005357.1 | + | 5753 | 0.68 | 0.633642 |
Target: 5'- cGCGCCGGGcaGCGaguGCGCCAgGGCCUugACc -3' miRNA: 3'- -UGUGGCUC--UGU---UGCGGUaCUGGA--UGa -5' |
|||||||
26603 | 5' | -52.9 | NC_005357.1 | + | 37120 | 0.68 | 0.6222 |
Target: 5'- -gGCCGGcGACcuggaaaauaucGACGCCGUGGCCgACa -3' miRNA: 3'- ugUGGCU-CUG------------UUGCGGUACUGGaUGa -5' |
|||||||
26603 | 5' | -52.9 | NC_005357.1 | + | 23046 | 0.68 | 0.610768 |
Target: 5'- uACGCCGAagugGACAAgGCCcUGGCCgACc -3' miRNA: 3'- -UGUGGCU----CUGUUgCGGuACUGGaUGa -5' |
|||||||
26603 | 5' | -52.9 | NC_005357.1 | + | 26862 | 0.69 | 0.599355 |
Target: 5'- cGCGUCGucacuGACGGCGCCAUuGACCUGg- -3' miRNA: 3'- -UGUGGCu----CUGUUGCGGUA-CUGGAUga -5' |
|||||||
26603 | 5' | -52.9 | NC_005357.1 | + | 14468 | 0.69 | 0.576631 |
Target: 5'- cCACCGAgGACGugcuCGCCAUccCCUACg -3' miRNA: 3'- uGUGGCU-CUGUu---GCGGUAcuGGAUGa -5' |
|||||||
26603 | 5' | -52.9 | NC_005357.1 | + | 41792 | 0.69 | 0.576631 |
Target: 5'- gGCACCGAcucGACGccggACGCCGUGuCCacgGCg -3' miRNA: 3'- -UGUGGCU---CUGU----UGCGGUACuGGa--UGa -5' |
|||||||
26603 | 5' | -52.9 | NC_005357.1 | + | 37861 | 0.69 | 0.576631 |
Target: 5'- cGCACCGAG-CAGCGCCucggcGACUUcgGCc -3' miRNA: 3'- -UGUGGCUCuGUUGCGGua---CUGGA--UGa -5' |
|||||||
26603 | 5' | -52.9 | NC_005357.1 | + | 27583 | 0.69 | 0.565338 |
Target: 5'- gGCACCGgcagcAGGCGGCGCCAgaUGGCgUGg- -3' miRNA: 3'- -UGUGGC-----UCUGUUGCGGU--ACUGgAUga -5' |
|||||||
26603 | 5' | -52.9 | NC_005357.1 | + | 37419 | 0.7 | 0.520835 |
Target: 5'- gGCGCUGAaagcgGACuGCGCC--GACCUGCUg -3' miRNA: 3'- -UGUGGCU-----CUGuUGCGGuaCUGGAUGA- -5' |
|||||||
26603 | 5' | -52.9 | NC_005357.1 | + | 14975 | 0.71 | 0.446646 |
Target: 5'- cGCGCUGGcauacCAGCGCCAgGGCCUGCg -3' miRNA: 3'- -UGUGGCUcu---GUUGCGGUaCUGGAUGa -5' |
|||||||
26603 | 5' | -52.9 | NC_005357.1 | + | 835 | 0.71 | 0.446646 |
Target: 5'- cGCGCaGAGACAGCGagccgaCCGUGGCCUGu- -3' miRNA: 3'- -UGUGgCUCUGUUGC------GGUACUGGAUga -5' |
|||||||
26603 | 5' | -52.9 | NC_005357.1 | + | 11499 | 0.72 | 0.436526 |
Target: 5'- gACACCGcaaaGGGCAGCGCCugcgcuggcGUGAggcCCUGCg -3' miRNA: 3'- -UGUGGC----UCUGUUGCGG---------UACU---GGAUGa -5' |
|||||||
26603 | 5' | -52.9 | NC_005357.1 | + | 1747 | 0.72 | 0.40698 |
Target: 5'- aACACCGGGcgguCAugGCC--GGCCUGCg -3' miRNA: 3'- -UGUGGCUCu---GUugCGGuaCUGGAUGa -5' |
|||||||
26603 | 5' | -52.9 | NC_005357.1 | + | 36928 | 0.72 | 0.397413 |
Target: 5'- gGCACCGAGuuGGCGCUAUGGCa---- -3' miRNA: 3'- -UGUGGCUCugUUGCGGUACUGgauga -5' |
|||||||
26603 | 5' | -52.9 | NC_005357.1 | + | 37673 | 0.72 | 0.387992 |
Target: 5'- aACGCCGAGaACAucGCgGCCGUGGCCg--- -3' miRNA: 3'- -UGUGGCUC-UGU--UG-CGGUACUGGauga -5' |
|||||||
26603 | 5' | -52.9 | NC_005357.1 | + | 7198 | 0.73 | 0.378719 |
Target: 5'- -aGCCGGGACAGCGCgAUGuCCacgGCa -3' miRNA: 3'- ugUGGCUCUGUUGCGgUACuGGa--UGa -5' |
|||||||
26603 | 5' | -52.9 | NC_005357.1 | + | 34912 | 0.73 | 0.369596 |
Target: 5'- cGCACgGuAGACAACGCCAccucgGcaACCUGCUg -3' miRNA: 3'- -UGUGgC-UCUGUUGCGGUa----C--UGGAUGA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home