Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26605 | 3' | -52.1 | NC_005357.1 | + | 16729 | 0.69 | 0.569447 |
Target: 5'- cGCGGGGCUGGUauGAGCAGCg------- -3' miRNA: 3'- -UGUUCCGGCCG--UUCGUCGauuaguac -5' |
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26605 | 3' | -52.1 | NC_005357.1 | + | 31912 | 0.73 | 0.341778 |
Target: 5'- aGCGuGGCCGGCGgucAGCAGUUcGUCAa- -3' miRNA: 3'- -UGUuCCGGCCGU---UCGUCGAuUAGUac -5' |
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26605 | 3' | -52.1 | NC_005357.1 | + | 24163 | 0.73 | 0.341778 |
Target: 5'- ---cGGCCGGCAAGUucucGGCgcaGGUCGUGa -3' miRNA: 3'- uguuCCGGCCGUUCG----UCGa--UUAGUAC- -5' |
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26605 | 3' | -52.1 | NC_005357.1 | + | 27519 | 0.79 | 0.157561 |
Target: 5'- -uGAGGCCGGCcAGCAGCaGAUCGc- -3' miRNA: 3'- ugUUCCGGCCGuUCGUCGaUUAGUac -5' |
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26605 | 3' | -52.1 | NC_005357.1 | + | 19090 | 0.68 | 0.62773 |
Target: 5'- gGCGAGGCCGuCGAauugcGCGGCUAccacGUCAUc -3' miRNA: 3'- -UGUUCCGGCcGUU-----CGUCGAU----UAGUAc -5' |
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26605 | 3' | -52.1 | NC_005357.1 | + | 27317 | 0.68 | 0.616019 |
Target: 5'- --cGGGCCuGGUAGGCAGCUAuuacggcgcgcgGUCGc- -3' miRNA: 3'- uguUCCGG-CCGUUCGUCGAU------------UAGUac -5' |
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26605 | 3' | -52.1 | NC_005357.1 | + | 4877 | 0.66 | 0.76497 |
Target: 5'- ----cGCCGGCGAGCcacGC-AAUCAUGc -3' miRNA: 3'- uguucCGGCCGUUCGu--CGaUUAGUAC- -5' |
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26605 | 3' | -52.1 | NC_005357.1 | + | 29875 | 0.66 | 0.754057 |
Target: 5'- cGCGAGGCCGGCAAGaaau---UCAc- -3' miRNA: 3'- -UGUUCCGGCCGUUCgucgauuAGUac -5' |
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26605 | 3' | -52.1 | NC_005357.1 | + | 13879 | 0.67 | 0.686104 |
Target: 5'- cGCGAuGGCCGGCG-GCcGCaaGGUCGUGc -3' miRNA: 3'- -UGUU-CCGGCCGUuCGuCGa-UUAGUAC- -5' |
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26605 | 3' | -52.1 | NC_005357.1 | + | 5535 | 0.68 | 0.662839 |
Target: 5'- --cAGGCCGGCA-GCuuCUGGUCAa- -3' miRNA: 3'- uguUCCGGCCGUuCGucGAUUAGUac -5' |
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26605 | 3' | -52.1 | NC_005357.1 | + | 34231 | 0.68 | 0.638273 |
Target: 5'- uACGAGGCCGuGCGcgaugaaaucgccGGCAGC--AUCcgGg -3' miRNA: 3'- -UGUUCCGGC-CGU-------------UCGUCGauUAGuaC- -5' |
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26605 | 3' | -52.1 | NC_005357.1 | + | 6203 | 0.69 | 0.581028 |
Target: 5'- uGCAGGuGaCGGCGcGCGGCUccuGGUCGUGg -3' miRNA: 3'- -UGUUC-CgGCCGUuCGUCGA---UUAGUAC- -5' |
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26605 | 3' | -52.1 | NC_005357.1 | + | 3007 | 0.67 | 0.697655 |
Target: 5'- -gAAGGCgCGGCGGGUcauAGCUGcUCGUc -3' miRNA: 3'- ugUUCCG-GCCGUUCG---UCGAUuAGUAc -5' |
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26605 | 3' | -52.1 | NC_005357.1 | + | 274 | 0.68 | 0.616019 |
Target: 5'- -uGAGGCaCGGCGuccAGUAGCUGcgCcgGa -3' miRNA: 3'- ugUUCCG-GCCGU---UCGUCGAUuaGuaC- -5' |
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26605 | 3' | -52.1 | NC_005357.1 | + | 24060 | 0.68 | 0.651152 |
Target: 5'- gGCAAGGCCaaccucgccgccGGCAAaCAGgUGGUCAUc -3' miRNA: 3'- -UGUUCCGG------------CCGUUcGUCgAUUAGUAc -5' |
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26605 | 3' | -52.1 | NC_005357.1 | + | 20109 | 0.67 | 0.697655 |
Target: 5'- cGCGuucGGCaCGGCcAGCAGC--AUCGUGc -3' miRNA: 3'- -UGUu--CCG-GCCGuUCGUCGauUAGUAC- -5' |
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26605 | 3' | -52.1 | NC_005357.1 | + | 17956 | 0.68 | 0.616019 |
Target: 5'- ---uGGCgcaGGCAAGCAGCaGGUCGUc -3' miRNA: 3'- uguuCCGg--CCGUUCGUCGaUUAGUAc -5' |
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26605 | 3' | -52.1 | NC_005357.1 | + | 242 | 0.69 | 0.557923 |
Target: 5'- gUAGGGCCGGCG-GUAGCgAAUCc-- -3' miRNA: 3'- uGUUCCGGCCGUuCGUCGaUUAGuac -5' |
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26605 | 3' | -52.1 | NC_005357.1 | + | 39846 | 0.66 | 0.775728 |
Target: 5'- aACAGGG-CGGCAAGCGcgcgcacgcGCUGGgcCGUGu -3' miRNA: 3'- -UGUUCCgGCCGUUCGU---------CGAUUa-GUAC- -5' |
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26605 | 3' | -52.1 | NC_005357.1 | + | 9328 | 0.66 | 0.76497 |
Target: 5'- cACGucGGCgCGGCGGGCGGCgg--CAUc -3' miRNA: 3'- -UGUu-CCG-GCCGUUCGUCGauuaGUAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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