miRNA display CGI


Results 41 - 60 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26605 5' -58.9 NC_005357.1 + 27432 0.76 0.08619
Target:  5'- cACCGCGcCCGGCgGCC-GCAGGCccugGCg -3'
miRNA:   3'- -UGGCGCaGGUCGgUGGuCGUUCGa---CG- -5'
26605 5' -58.9 NC_005357.1 + 21753 0.76 0.083744
Target:  5'- gGCCGCGUCCacauaggacaGGCCGCCcGGCAcGgUGCu -3'
miRNA:   3'- -UGGCGCAGG----------UCGGUGG-UCGUuCgACG- -5'
26605 5' -58.9 NC_005357.1 + 7785 0.76 0.083744
Target:  5'- cGCCgGCGUCCAcccuucGCCGcCCAGCAGGC-GCu -3'
miRNA:   3'- -UGG-CGCAGGU------CGGU-GGUCGUUCGaCG- -5'
26605 5' -58.9 NC_005357.1 + 4015 0.77 0.068393
Target:  5'- -aCGCG-CCGGCCACCAGCGucauGCcGCg -3'
miRNA:   3'- ugGCGCaGGUCGGUGGUCGUu---CGaCG- -5'
26605 5' -58.9 NC_005357.1 + 4787 0.8 0.042823
Target:  5'- cACUGCGcCCAGCaCGCCGGCuggcGCUGCg -3'
miRNA:   3'- -UGGCGCaGGUCG-GUGGUCGuu--CGACG- -5'
26605 5' -58.9 NC_005357.1 + 5653 0.71 0.198834
Target:  5'- cACgGCGgaaaCCAGCgGuagcuguUCAGCAAGCUGCu -3'
miRNA:   3'- -UGgCGCa---GGUCGgU-------GGUCGUUCGACG- -5'
26605 5' -58.9 NC_005357.1 + 1304 0.71 0.199369
Target:  5'- cGCCGCGcCCagggcgacGGCCACCAGgccgaCAAGC-GCg -3'
miRNA:   3'- -UGGCGCaGG--------UCGGUGGUC-----GUUCGaCG- -5'
26605 5' -58.9 NC_005357.1 + 2572 0.68 0.29478
Target:  5'- uGCCGgcuuugaGUUCAGCUugcaagGCCAGCAGGUUGg -3'
miRNA:   3'- -UGGCg------CAGGUCGG------UGGUCGUUCGACg -5'
26605 5' -58.9 NC_005357.1 + 11584 0.69 0.28744
Target:  5'- uGCCGC--CCagGGCCGCCGGCuGGCcGCc -3'
miRNA:   3'- -UGGCGcaGG--UCGGUGGUCGuUCGaCG- -5'
26605 5' -58.9 NC_005357.1 + 4100 0.69 0.273191
Target:  5'- cGCCGUGguguuuccgCCAGCCugCGcuGCAGcGUUGCu -3'
miRNA:   3'- -UGGCGCa--------GGUCGGugGU--CGUU-CGACG- -5'
26605 5' -58.9 NC_005357.1 + 27500 0.69 0.266281
Target:  5'- uGCCgGCGgccUCGGCCGCCAGCuucucGGC-GCg -3'
miRNA:   3'- -UGG-CGCa--GGUCGGUGGUCGu----UCGaCG- -5'
26605 5' -58.9 NC_005357.1 + 28568 0.69 0.259514
Target:  5'- cAUCGCGgcgcgcacgUCGGCCACCGGCA-GCgugGUg -3'
miRNA:   3'- -UGGCGCa--------GGUCGGUGGUCGUuCGa--CG- -5'
26605 5' -58.9 NC_005357.1 + 34692 0.69 0.252888
Target:  5'- cGCCaacaGCaagCCGGCCGCCgAGCGugcGCUGCa -3'
miRNA:   3'- -UGG----CGca-GGUCGGUGG-UCGUu--CGACG- -5'
26605 5' -58.9 NC_005357.1 + 22833 0.7 0.240054
Target:  5'- cGCCGCGcugccgaCAGCCGaCAGCGcgcGCUGCg -3'
miRNA:   3'- -UGGCGCag-----GUCGGUgGUCGUu--CGACG- -5'
26605 5' -58.9 NC_005357.1 + 40557 0.7 0.227767
Target:  5'- gGCCaGCG-CCGGCCACgGGCugaacCUGCa -3'
miRNA:   3'- -UGG-CGCaGGUCGGUGgUCGuuc--GACG- -5'
26605 5' -58.9 NC_005357.1 + 25359 0.7 0.216018
Target:  5'- uUCGCauagCCGGCCACCGgGCAGGC-GCc -3'
miRNA:   3'- uGGCGca--GGUCGGUGGU-CGUUCGaCG- -5'
26605 5' -58.9 NC_005357.1 + 30123 0.71 0.21034
Target:  5'- gGCCGCG-CCAgaacacGCCGCCGGC---CUGCa -3'
miRNA:   3'- -UGGCGCaGGU------CGGUGGUCGuucGACG- -5'
26605 5' -58.9 NC_005357.1 + 38095 0.71 0.208662
Target:  5'- uCUGCuaccCCAGCCcgcaacuggaugacGCCGGCAAGCUGUc -3'
miRNA:   3'- uGGCGca--GGUCGG--------------UGGUCGUUCGACG- -5'
26605 5' -58.9 NC_005357.1 + 32367 0.71 0.204791
Target:  5'- cGCCGCcgaggccCCGGCCGcCCAGCAGGaaGCc -3'
miRNA:   3'- -UGGCGca-----GGUCGGU-GGUCGUUCgaCG- -5'
26605 5' -58.9 NC_005357.1 + 1708 0.71 0.204791
Target:  5'- cGCCGUGggCCGGCgUGCCGGCGAGg-GCg -3'
miRNA:   3'- -UGGCGCa-GGUCG-GUGGUCGUUCgaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.