miRNA display CGI


Results 41 - 60 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26606 3' -52.5 NC_005357.1 + 27421 0.67 0.788957
Target:  5'- cGCGCCUggCGcACCGcGCC--CGGCGGCCg -3'
miRNA:   3'- -CGUGGA--GC-UGGUcUGGuaGUUGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 18486 0.67 0.788957
Target:  5'- -gACCUCGccgggcgugcGCCuGACCAUCA-CG-CCu -3'
miRNA:   3'- cgUGGAGC----------UGGuCUGGUAGUuGCuGG- -5'
26606 3' -52.5 NC_005357.1 + 38077 0.67 0.787949
Target:  5'- cGCACCggcaacgcaaCGGCCAGcaucaaggcuggcACCAUCGugGAg- -3'
miRNA:   3'- -CGUGGa---------GCUGGUC-------------UGGUAGUugCUgg -5'
26606 3' -52.5 NC_005357.1 + 15758 0.67 0.7788
Target:  5'- cGCACCUCGuuGCCGccaauggugcGACgCA-CGACGGCa -3'
miRNA:   3'- -CGUGGAGC--UGGU----------CUG-GUaGUUGCUGg -5'
26606 3' -52.5 NC_005357.1 + 28550 0.67 0.7788
Target:  5'- -gACCUugCGGCCGccGGCCAUC-GCGGCg -3'
miRNA:   3'- cgUGGA--GCUGGU--CUGGUAGuUGCUGg -5'
26606 3' -52.5 NC_005357.1 + 1450 0.67 0.7788
Target:  5'- aCACCUucuUGACgGcGCgGUCGGCGGCCu -3'
miRNA:   3'- cGUGGA---GCUGgUcUGgUAGUUGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 34202 0.67 0.7788
Target:  5'- aGCugCUgaCGGCCGccGACCAgc-GCGACUa -3'
miRNA:   3'- -CGugGA--GCUGGU--CUGGUaguUGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 21576 0.67 0.7788
Target:  5'- cGCGCCgUCGugCAGucggucaguuCCcgCGAUGACg -3'
miRNA:   3'- -CGUGG-AGCugGUCu---------GGuaGUUGCUGg -5'
26606 3' -52.5 NC_005357.1 + 14085 0.67 0.7788
Target:  5'- cGCGCUgcccgacgaGGCCaAGGCCAUCGAgucCGACg -3'
miRNA:   3'- -CGUGGag-------CUGG-UCUGGUAGUU---GCUGg -5'
26606 3' -52.5 NC_005357.1 + 25622 0.67 0.777775
Target:  5'- uGCGCCgccugggcgCGACCAacuggcaacuggcGACCAUCGccuucACGucGCCg -3'
miRNA:   3'- -CGUGGa--------GCUGGU-------------CUGGUAGU-----UGC--UGG- -5'
26606 3' -52.5 NC_005357.1 + 24139 0.67 0.768483
Target:  5'- aCACCgUCGccACCGGcCCGcUGACGGCCg -3'
miRNA:   3'- cGUGG-AGC--UGGUCuGGUaGUUGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 11413 0.67 0.768483
Target:  5'- -uGCCUCGGCCGGcaaGCC--CGugGACa -3'
miRNA:   3'- cgUGGAGCUGGUC---UGGuaGUugCUGg -5'
26606 3' -52.5 NC_005357.1 + 38147 0.67 0.765358
Target:  5'- uCACCgcCGACaCGG-CCAUCAccaugccggcgcugACGGCCg -3'
miRNA:   3'- cGUGGa-GCUG-GUCuGGUAGU--------------UGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 29753 0.67 0.76222
Target:  5'- cGgGCCUCGACaCGcGCCugcgcaugaugggCGACGACCc -3'
miRNA:   3'- -CgUGGAGCUG-GUcUGGua-----------GUUGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 27295 0.67 0.758017
Target:  5'- cGCGCCUUGGCgaAGGCUucccaCGACGcCCa -3'
miRNA:   3'- -CGUGGAGCUGg-UCUGGua---GUUGCuGG- -5'
26606 3' -52.5 NC_005357.1 + 32850 0.67 0.758017
Target:  5'- uCGCCU-GGCCgcAGACgGUCGGCG-CCg -3'
miRNA:   3'- cGUGGAgCUGG--UCUGgUAGUUGCuGG- -5'
26606 3' -52.5 NC_005357.1 + 38234 0.67 0.758017
Target:  5'- cGUGCUcgCGGCCAacaugcccGCCAUCGagGCGGCCg -3'
miRNA:   3'- -CGUGGa-GCUGGUc-------UGGUAGU--UGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 17122 0.67 0.758017
Target:  5'- aGCGCCggUGGCaGGGCCGgccgC-ACGACCu -3'
miRNA:   3'- -CGUGGa-GCUGgUCUGGUa---GuUGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 8392 0.67 0.753793
Target:  5'- cGCGCUggcugcguagccagUCGGCCAgGGCCGUgCGcuugucuACGGCCu -3'
miRNA:   3'- -CGUGG--------------AGCUGGU-CUGGUA-GU-------UGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 15604 0.67 0.751673
Target:  5'- cGCGCCaUCGGCCAGGaugcugacgguuuucCCuUCGAgGugCu -3'
miRNA:   3'- -CGUGG-AGCUGGUCU---------------GGuAGUUgCugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.