miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26607 3' -60.2 NC_005357.1 + 33801 0.67 0.327443
Target:  5'- gCGACCUcGCCaccgcagcGGCCGAGaaGCGCa-- -3'
miRNA:   3'- gGCUGGA-CGG--------CCGGCUUgaCGCGcuu -5'
26607 3' -60.2 NC_005357.1 + 7203 0.67 0.327443
Target:  5'- -gGGCUUGCCa-UCGGACUGCGUGAu -3'
miRNA:   3'- ggCUGGACGGccGGCUUGACGCGCUu -5'
26607 3' -60.2 NC_005357.1 + 37646 0.67 0.319633
Target:  5'- gCCGGCgUGCUGGgCGcaGugUGgGCGAAc -3'
miRNA:   3'- -GGCUGgACGGCCgGC--UugACgCGCUU- -5'
26607 3' -60.2 NC_005357.1 + 41822 0.67 0.319633
Target:  5'- aCGGCgCUGCUGGCCGAcCcGCagGCGGc -3'
miRNA:   3'- gGCUG-GACGGCCGGCUuGaCG--CGCUu -5'
26607 3' -60.2 NC_005357.1 + 33732 0.67 0.319633
Target:  5'- uCCGACCcgGCCaguacaccaacGCCGAGgUGCGCGc- -3'
miRNA:   3'- -GGCUGGa-CGGc----------CGGCUUgACGCGCuu -5'
26607 3' -60.2 NC_005357.1 + 35952 0.67 0.319633
Target:  5'- gCgGGCCUGCgCGGCgugcaGuucCUGCGCGAc -3'
miRNA:   3'- -GgCUGGACG-GCCGg----Cuu-GACGCGCUu -5'
26607 3' -60.2 NC_005357.1 + 28556 0.67 0.319633
Target:  5'- gCGGCC-GCCGGCCaucGCgGCGCGc- -3'
miRNA:   3'- gGCUGGaCGGCCGGcu-UGaCGCGCuu -5'
26607 3' -60.2 NC_005357.1 + 7708 0.67 0.319633
Target:  5'- gCCGGCUUGCCGa-UGAACUGCaGCGc- -3'
miRNA:   3'- -GGCUGGACGGCcgGCUUGACG-CGCuu -5'
26607 3' -60.2 NC_005357.1 + 20740 0.67 0.311963
Target:  5'- cUCGACCUGUCgcaccuucuGGCUGAcaucguggACgUGCGCGAGc -3'
miRNA:   3'- -GGCUGGACGG---------CCGGCU--------UG-ACGCGCUU- -5'
26607 3' -60.2 NC_005357.1 + 34557 0.68 0.304434
Target:  5'- cCCGACCa-UCGGCCGAAgcCUGaacCGCGAAg -3'
miRNA:   3'- -GGCUGGacGGCCGGCUU--GAC---GCGCUU- -5'
26607 3' -60.2 NC_005357.1 + 19125 0.68 0.304434
Target:  5'- cCCGGCCagUGCCGGCCGcaAACaggcauucgugGCGCa-- -3'
miRNA:   3'- -GGCUGG--ACGGCCGGC--UUGa----------CGCGcuu -5'
26607 3' -60.2 NC_005357.1 + 22794 0.68 0.304434
Target:  5'- cCCGAC--GCUGGCCGAugU-CGCGGc -3'
miRNA:   3'- -GGCUGgaCGGCCGGCUugAcGCGCUu -5'
26607 3' -60.2 NC_005357.1 + 13844 0.68 0.297045
Target:  5'- aCCGACaccacgCUGCCgguGGCCGAcgUGCGCGc- -3'
miRNA:   3'- -GGCUG------GACGG---CCGGCUugACGCGCuu -5'
26607 3' -60.2 NC_005357.1 + 1881 0.68 0.289796
Target:  5'- gUGGCCggcGCUGGCCGGG-UGgGCGAAc -3'
miRNA:   3'- gGCUGGa--CGGCCGGCUUgACgCGCUU- -5'
26607 3' -60.2 NC_005357.1 + 36080 0.68 0.282687
Target:  5'- cCCGGCCUuCgGGCCGGGCgcuuuggcugGgGCGGAa -3'
miRNA:   3'- -GGCUGGAcGgCCGGCUUGa---------CgCGCUU- -5'
26607 3' -60.2 NC_005357.1 + 37438 0.68 0.282687
Target:  5'- gCCGACCUGCUGuucGCCaacgucaugGAACUgaccagcaGCGCGAu -3'
miRNA:   3'- -GGCUGGACGGC---CGG---------CUUGA--------CGCGCUu -5'
26607 3' -60.2 NC_005357.1 + 31663 0.68 0.275716
Target:  5'- gCCGAagaaCUGCgGGCCGAAgUcgaGCGCGc- -3'
miRNA:   3'- -GGCUg---GACGgCCGGCUUgA---CGCGCuu -5'
26607 3' -60.2 NC_005357.1 + 30843 0.68 0.275716
Target:  5'- gCGGCCaGCCGGCgGccCUGgGCGGc -3'
miRNA:   3'- gGCUGGaCGGCCGgCuuGACgCGCUu -5'
26607 3' -60.2 NC_005357.1 + 15053 0.68 0.275716
Target:  5'- -gGAUUUGCUGGCCGAAUggcuggacgagUGCuGCGAGg -3'
miRNA:   3'- ggCUGGACGGCCGGCUUG-----------ACG-CGCUU- -5'
26607 3' -60.2 NC_005357.1 + 26270 0.69 0.262188
Target:  5'- gCCGGCCUgGUCGGCuCGcGCaucgcGCGCGAu -3'
miRNA:   3'- -GGCUGGA-CGGCCG-GCuUGa----CGCGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.