miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26608 3' -54.2 NC_005357.1 + 7759 0.66 0.660893
Target:  5'- aGCGaUUGCAGcacCGGCGcgaucuGCGCCGGCg -3'
miRNA:   3'- gUGC-AACGUCaa-GUUGC------CGCGGUCGg -5'
26608 3' -54.2 NC_005357.1 + 13410 0.66 0.660893
Target:  5'- gCAuCGUUGCGGUaacgguucUCGucccACGGCaggcccGCCAGCUu -3'
miRNA:   3'- -GU-GCAACGUCA--------AGU----UGCCG------CGGUCGG- -5'
26608 3' -54.2 NC_005357.1 + 27584 0.66 0.683406
Target:  5'- gCACcg-GCAGca-GGCGGCGCCAGa- -3'
miRNA:   3'- -GUGcaaCGUCaagUUGCCGCGGUCgg -5'
26608 3' -54.2 NC_005357.1 + 1460 0.66 0.683406
Target:  5'- gACGgcGCGG-UCGGCGGCcuccugGCaGGCCg -3'
miRNA:   3'- gUGCaaCGUCaAGUUGCCG------CGgUCGG- -5'
26608 3' -54.2 NC_005357.1 + 5290 0.66 0.705711
Target:  5'- gGCGUUGuCGGccacggcgUCGAUauuuuccaGGuCGCCGGCCa -3'
miRNA:   3'- gUGCAAC-GUCa-------AGUUG--------CC-GCGGUCGG- -5'
26608 3' -54.2 NC_005357.1 + 8209 0.66 0.716755
Target:  5'- gCACGgccucGUAGUcgcgcuggUCGGCGGCcGUCAGCa -3'
miRNA:   3'- -GUGCaa---CGUCA--------AGUUGCCG-CGGUCGg -5'
26608 3' -54.2 NC_005357.1 + 23539 0.66 0.683406
Target:  5'- gGCGcacGCGG-UCGAUGGCcUCGGCCg -3'
miRNA:   3'- gUGCaa-CGUCaAGUUGCCGcGGUCGG- -5'
26608 3' -54.2 NC_005357.1 + 17639 0.66 0.69459
Target:  5'- gCAuCGUgcgGCAGUacggccacgaucUUGAUGGCGUCGGCg -3'
miRNA:   3'- -GU-GCAa--CGUCA------------AGUUGCCGCGGUCGg -5'
26608 3' -54.2 NC_005357.1 + 5562 0.67 0.638267
Target:  5'- cCACG--GUA--UCGACGGCGCCaacgcuGGCCg -3'
miRNA:   3'- -GUGCaaCGUcaAGUUGCCGCGG------UCGG- -5'
26608 3' -54.2 NC_005357.1 + 37587 0.67 0.60431
Target:  5'- gCugGccGCuuuccGUgaauucgaCGACGGCGCCGGCCc -3'
miRNA:   3'- -GugCaaCGu----CAa-------GUUGCCGCGGUCGG- -5'
26608 3' -54.2 NC_005357.1 + 25985 0.67 0.62694
Target:  5'- cUACGacGCcguGUUCAACGcCGCCGGCg -3'
miRNA:   3'- -GUGCaaCGu--CAAGUUGCcGCGGUCGg -5'
26608 3' -54.2 NC_005357.1 + 30153 0.67 0.613354
Target:  5'- cCGCGUcggacaucagcgGCAGU----UGGCGCCAGUCg -3'
miRNA:   3'- -GUGCAa-----------CGUCAaguuGCCGCGGUCGG- -5'
26608 3' -54.2 NC_005357.1 + 28186 0.67 0.615618
Target:  5'- cCACGcccaGCAGgu--GCGGCGCCuuguccaggucGGCCa -3'
miRNA:   3'- -GUGCaa--CGUCaaguUGCCGCGG-----------UCGG- -5'
26608 3' -54.2 NC_005357.1 + 42314 0.67 0.638267
Target:  5'- aCGCGaaGUGGUUgGACGGCGCgCAGa- -3'
miRNA:   3'- -GUGCaaCGUCAAgUUGCCGCG-GUCgg -5'
26608 3' -54.2 NC_005357.1 + 3535 0.67 0.649589
Target:  5'- gACG-UGCcGUUCca-GGCGCC-GCCg -3'
miRNA:   3'- gUGCaACGuCAAGuugCCGCGGuCGG- -5'
26608 3' -54.2 NC_005357.1 + 41366 0.67 0.648458
Target:  5'- gCGCGUUacuggacGcCGGUUC-GCGGCgacaugcugccGCCGGCCg -3'
miRNA:   3'- -GUGCAA-------C-GUCAAGuUGCCG-----------CGGUCGG- -5'
26608 3' -54.2 NC_005357.1 + 15272 0.67 0.638267
Target:  5'- cCGCG-UGCGGcgcgugggggacUUCGagugaugcgcGCGGCGUCAGCUu -3'
miRNA:   3'- -GUGCaACGUC------------AAGU----------UGCCGCGGUCGG- -5'
26608 3' -54.2 NC_005357.1 + 25597 0.67 0.649589
Target:  5'- uGCGgcccagGCAGUggCAaccacggcggcGCGGuCGCCAGCa -3'
miRNA:   3'- gUGCaa----CGUCAa-GU-----------UGCC-GCGGUCGg -5'
26608 3' -54.2 NC_005357.1 + 23627 0.67 0.638267
Target:  5'- aACG-UGCGGUUgGuuucGCGGUaGCCGGCg -3'
miRNA:   3'- gUGCaACGUCAAgU----UGCCG-CGGUCGg -5'
26608 3' -54.2 NC_005357.1 + 5428 0.67 0.638267
Target:  5'- cCACGgcGCGGau-GGCGGCGUgGGCg -3'
miRNA:   3'- -GUGCaaCGUCaagUUGCCGCGgUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.