miRNA display CGI


Results 41 - 60 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26608 3' -54.2 NC_005357.1 + 37587 0.67 0.60431
Target:  5'- gCugGccGCuuuccGUgaauucgaCGACGGCGCCGGCCc -3'
miRNA:   3'- -GugCaaCGu----CAa-------GUUGCCGCGGUCGG- -5'
26608 3' -54.2 NC_005357.1 + 23992 0.68 0.593028
Target:  5'- uCACGUuuucggUGCAGgacUCGGCGGacaaCGCCAccuucGCCg -3'
miRNA:   3'- -GUGCA------ACGUCa--AGUUGCC----GCGGU-----CGG- -5'
26608 3' -54.2 NC_005357.1 + 8784 0.68 0.593028
Target:  5'- aCGCGgcGCAcgaugggUCGGCcGCGCCGGUCa -3'
miRNA:   3'- -GUGCaaCGUca-----AGUUGcCGCGGUCGG- -5'
26608 3' -54.2 NC_005357.1 + 38032 0.68 0.593028
Target:  5'- gCACGcucaagGCccGGcgCGACGGCGCCuGGCUg -3'
miRNA:   3'- -GUGCaa----CG--UCaaGUUGCCGCGG-UCGG- -5'
26608 3' -54.2 NC_005357.1 + 33743 0.68 0.593028
Target:  5'- gCGCGgcGCAcaccUgGGCGGCGCagCAGCCg -3'
miRNA:   3'- -GUGCaaCGUca--AgUUGCCGCG--GUCGG- -5'
26608 3' -54.2 NC_005357.1 + 28648 0.68 0.593028
Target:  5'- cCGCGc-GCAGUgccaGAuCGGUGCCGGCg -3'
miRNA:   3'- -GUGCaaCGUCAag--UU-GCCGCGGUCGg -5'
26608 3' -54.2 NC_005357.1 + 2230 0.68 0.581781
Target:  5'- cCACGc-GCAGca-GGCGGCGCgUGGCCg -3'
miRNA:   3'- -GUGCaaCGUCaagUUGCCGCG-GUCGG- -5'
26608 3' -54.2 NC_005357.1 + 24693 0.68 0.581781
Target:  5'- cCACGcccagGCuGUcCAuCGGUGCCAGUCg -3'
miRNA:   3'- -GUGCaa---CGuCAaGUuGCCGCGGUCGG- -5'
26608 3' -54.2 NC_005357.1 + 9770 0.68 0.581781
Target:  5'- uCACGUcggGCAGcUUC-GCGGCGCCGa-- -3'
miRNA:   3'- -GUGCAa--CGUC-AAGuUGCCGCGGUcgg -5'
26608 3' -54.2 NC_005357.1 + 13792 0.68 0.581781
Target:  5'- gCGCGUUGCuGgUCAGuuUGcGCGCCuguGCCu -3'
miRNA:   3'- -GUGCAACGuCaAGUU--GC-CGCGGu--CGG- -5'
26608 3' -54.2 NC_005357.1 + 13316 0.68 0.581781
Target:  5'- gGCGUUGUAGgcggcguaggcuUUCGGCaGGuCGCC-GCCg -3'
miRNA:   3'- gUGCAACGUC------------AAGUUG-CC-GCGGuCGG- -5'
26608 3' -54.2 NC_005357.1 + 4247 0.68 0.570579
Target:  5'- gAUGgcGUAGU----CGGUGCCGGCCg -3'
miRNA:   3'- gUGCaaCGUCAaguuGCCGCGGUCGG- -5'
26608 3' -54.2 NC_005357.1 + 4361 0.68 0.570579
Target:  5'- uGCGUUGcCGGUgcgcgugaaggCGACGGCcgacuuGUCGGCCu -3'
miRNA:   3'- gUGCAAC-GUCAa----------GUUGCCG------CGGUCGG- -5'
26608 3' -54.2 NC_005357.1 + 10941 0.68 0.559429
Target:  5'- gGCcucggGCAGUUgcGCGGCGaCAGCCg -3'
miRNA:   3'- gUGcaa--CGUCAAguUGCCGCgGUCGG- -5'
26608 3' -54.2 NC_005357.1 + 18664 0.68 0.548341
Target:  5'- cCGCGgcGCA--UCGGCccgguGGCGCCGGCa -3'
miRNA:   3'- -GUGCaaCGUcaAGUUG-----CCGCGGUCGg -5'
26608 3' -54.2 NC_005357.1 + 33174 0.69 0.537323
Target:  5'- --aGUUGCGGaa-GugGGCGCCcucggcacGGCCa -3'
miRNA:   3'- gugCAACGUCaagUugCCGCGG--------UCGG- -5'
26608 3' -54.2 NC_005357.1 + 38136 0.69 0.537323
Target:  5'- gCugG-UGCAGUUCAccgccgacACGGCcaucaccauGCCGGCg -3'
miRNA:   3'- -GugCaACGUCAAGU--------UGCCG---------CGGUCGg -5'
26608 3' -54.2 NC_005357.1 + 25490 0.69 0.537323
Target:  5'- gCACGcUGC---UgGACGGCGCCGuGCCc -3'
miRNA:   3'- -GUGCaACGucaAgUUGCCGCGGU-CGG- -5'
26608 3' -54.2 NC_005357.1 + 12439 0.69 0.537323
Target:  5'- gCACGaugGCccGUUCGACGGCuGCauccaGGCCg -3'
miRNA:   3'- -GUGCaa-CGu-CAAGUUGCCG-CGg----UCGG- -5'
26608 3' -54.2 NC_005357.1 + 22045 0.69 0.526383
Target:  5'- cCAUGUUGCGGUcgucgcgcuugcUCGGgucgcgguCGGCGCgCGGCUc -3'
miRNA:   3'- -GUGCAACGUCA------------AGUU--------GCCGCG-GUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.