miRNA display CGI


Results 21 - 39 of 39 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26608 5' -62.1 NC_005357.1 + 16937 0.67 0.260214
Target:  5'- aGGGCaCGG-CGCCg--UCCAgcagcguGCCGCGu -3'
miRNA:   3'- aCCCG-GCCgGCGGacaAGGU-------UGGCGU- -5'
26608 5' -62.1 NC_005357.1 + 17134 0.68 0.212591
Target:  5'- aGGGCCGGCCGCa-----CGACCuCAa -3'
miRNA:   3'- aCCCGGCCGGCGgacaagGUUGGcGU- -5'
26608 5' -62.1 NC_005357.1 + 18021 0.71 0.131426
Target:  5'- cGGGCCGGCUGCgCUucUUCAACuugCGCAg -3'
miRNA:   3'- aCCCGGCCGGCG-GAcaAGGUUG---GCGU- -5'
26608 5' -62.1 NC_005357.1 + 19495 0.67 0.260869
Target:  5'- gUGGGCaGGCCGCUg---CgAACCGUg -3'
miRNA:   3'- -ACCCGgCCGGCGGacaaGgUUGGCGu -5'
26608 5' -62.1 NC_005357.1 + 19745 0.71 0.135064
Target:  5'- uUGGGCUGGuuGCCguUGUUgCCGGCCa-- -3'
miRNA:   3'- -ACCCGGCCggCGG--ACAA-GGUUGGcgu -5'
26608 5' -62.1 NC_005357.1 + 21745 0.69 0.191461
Target:  5'- uUGGGCgCGGCCGCg---UCCAcauaggacagGCCGCc -3'
miRNA:   3'- -ACCCG-GCCGGCGgacaAGGU----------UGGCGu -5'
26608 5' -62.1 NC_005357.1 + 22797 0.66 0.313142
Target:  5'- cGGGCCGGUCaGCaugGUgCCGgacuggcccgacuucGCCGCGc -3'
miRNA:   3'- aCCCGGCCGG-CGga-CAaGGU---------------UGGCGU- -5'
26608 5' -62.1 NC_005357.1 + 23574 0.7 0.167659
Target:  5'- gUGGGCaugGGCCGCCcgGccUUCUAcauGCCGCGc -3'
miRNA:   3'- -ACCCGg--CCGGCGGa-C--AAGGU---UGGCGU- -5'
26608 5' -62.1 NC_005357.1 + 24508 0.66 0.302674
Target:  5'- gGGGCUGGCgcccaCGCCgaucacgUCCAgguggaugACCGCGu -3'
miRNA:   3'- aCCCGGCCG-----GCGGaca----AGGU--------UGGCGU- -5'
26608 5' -62.1 NC_005357.1 + 28666 0.67 0.241791
Target:  5'- cGGuGCCGGCgGCCUcg-CCAG-CGCGg -3'
miRNA:   3'- aCC-CGGCCGgCGGAcaaGGUUgGCGU- -5'
26608 5' -62.1 NC_005357.1 + 29678 0.66 0.317711
Target:  5'- aGGGCgCGGCCGUgUGUUUgaaAAUCGgAa -3'
miRNA:   3'- aCCCG-GCCGGCGgACAAGg--UUGGCgU- -5'
26608 5' -62.1 NC_005357.1 + 30602 0.73 0.094317
Target:  5'- cGcGGCgCGGCCgGUCUGUUCCAGuCCGUc -3'
miRNA:   3'- aC-CCG-GCCGG-CGGACAAGGUU-GGCGu -5'
26608 5' -62.1 NC_005357.1 + 31524 0.66 0.28819
Target:  5'- cGGGCaGGUCGCCa-UUCCGguggaggaauacGCCGCGc -3'
miRNA:   3'- aCCCGgCCGGCGGacAAGGU------------UGGCGU- -5'
26608 5' -62.1 NC_005357.1 + 34208 0.66 0.302674
Target:  5'- aGGGCaCGGCCGCgcacGaaCUGGCCGCc -3'
miRNA:   3'- aCCCG-GCCGGCGga--CaaGGUUGGCGu -5'
26608 5' -62.1 NC_005357.1 + 36043 0.78 0.041403
Target:  5'- cGGGCCGGCCgGCCUGcgCCugauuGCCGaCGu -3'
miRNA:   3'- aCCCGGCCGG-CGGACaaGGu----UGGC-GU- -5'
26608 5' -62.1 NC_005357.1 + 36074 0.66 0.295363
Target:  5'- gUGGGCCGGuUCGCCac--CCAGaCGCAc -3'
miRNA:   3'- -ACCCGGCC-GGCGGacaaGGUUgGCGU- -5'
26608 5' -62.1 NC_005357.1 + 37274 0.7 0.156357
Target:  5'- aGGGCgugagcagcgaCGGCCGCCUgcgcggcacguugcaGUUcaacggcgCCAGCCGCAc -3'
miRNA:   3'- aCCCG-----------GCCGGCGGA---------------CAA--------GGUUGGCGU- -5'
26608 5' -62.1 NC_005357.1 + 37341 1.08 0.000175
Target:  5'- cUGGGCCGGCCGCCUGUUCCAACCGCAa -3'
miRNA:   3'- -ACCCGGCCGGCGGACAAGGUUGGCGU- -5'
26608 5' -62.1 NC_005357.1 + 38378 0.67 0.254377
Target:  5'- cUGGGCCGcUgGCCUGccgCUcGCCGCGg -3'
miRNA:   3'- -ACCCGGCcGgCGGACaa-GGuUGGCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.