miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26609 3' -55.3 NC_005357.1 + 13733 0.72 0.32274
Target:  5'- aGCAUCGACCUugugaacgacgUGGCGCGccGcGCUGGc -3'
miRNA:   3'- cCGUAGCUGGA-----------ACUGCGCuaC-CGGCU- -5'
26609 3' -55.3 NC_005357.1 + 13780 0.7 0.409833
Target:  5'- cGGCAcCGAUCUggcacUGcGCGCGGaacUGGCCGGc -3'
miRNA:   3'- -CCGUaGCUGGA-----AC-UGCGCU---ACCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 13863 0.7 0.428926
Target:  5'- uGGCcgaCGugCgcGcCGCGAUGGCCGGc -3'
miRNA:   3'- -CCGua-GCugGaaCuGCGCUACCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 13867 0.69 0.499605
Target:  5'- aGGUuUCGGCCUUuAUGCGAUcgacaGCCGAa -3'
miRNA:   3'- -CCGuAGCUGGAAcUGCGCUAc----CGGCU- -5'
26609 3' -55.3 NC_005357.1 + 13942 0.66 0.634854
Target:  5'- cGGCAaugccgagcggaugcUCGACCacuACGCGAcGGCCu- -3'
miRNA:   3'- -CCGU---------------AGCUGGaacUGCGCUaCCGGcu -5'
26609 3' -55.3 NC_005357.1 + 14198 0.66 0.685843
Target:  5'- cGCAgucCGACCc--GCGCGuggucgucggcGUGGCCGAc -3'
miRNA:   3'- cCGUa--GCUGGaacUGCGC-----------UACCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 14996 0.73 0.299452
Target:  5'- gGGCcugCGGCCgccgGGCGCGGUGcGCCa- -3'
miRNA:   3'- -CCGua-GCUGGaa--CUGCGCUAC-CGGcu -5'
26609 3' -55.3 NC_005357.1 + 15440 0.71 0.391277
Target:  5'- aGCuuGUUGAuguUCUUGACGCGcccuUGGCCGAa -3'
miRNA:   3'- cCG--UAGCU---GGAACUGCGCu---ACCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 15720 0.75 0.213515
Target:  5'- gGGCAUCGAac-UGGCGCGA-GGCCa- -3'
miRNA:   3'- -CCGUAGCUggaACUGCGCUaCCGGcu -5'
26609 3' -55.3 NC_005357.1 + 16142 0.66 0.663747
Target:  5'- uGGCAUCcAUCgc-GCGCGAUGcgcgaGCCGAc -3'
miRNA:   3'- -CCGUAGcUGGaacUGCGCUAC-----CGGCU- -5'
26609 3' -55.3 NC_005357.1 + 16262 0.68 0.510132
Target:  5'- uGGCGUUGGCCUc-GCGCGc-GGCCa- -3'
miRNA:   3'- -CCGUAGCUGGAacUGCGCuaCCGGcu -5'
26609 3' -55.3 NC_005357.1 + 18374 0.67 0.597071
Target:  5'- cGGCgagGUUGGCCUugccgaUGGCGCcGGUGGCgGc -3'
miRNA:   3'- -CCG---UAGCUGGA------ACUGCG-CUACCGgCu -5'
26609 3' -55.3 NC_005357.1 + 18405 0.66 0.674815
Target:  5'- cGCGUCG-CCUU--CGCuGAauUGGCCGAc -3'
miRNA:   3'- cCGUAGCuGGAAcuGCG-CU--ACCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 18670 0.69 0.499605
Target:  5'- cGCAUCGGCCcgGugGCGccGGCaUGGc -3'
miRNA:   3'- cCGUAGCUGGaaCugCGCuaCCG-GCU- -5'
26609 3' -55.3 NC_005357.1 + 19058 0.7 0.407015
Target:  5'- cGGCGUCGAUCagcgUGuccucgccgaggucACGCGAUugcaGGCCGGc -3'
miRNA:   3'- -CCGUAGCUGGa---AC--------------UGCGCUA----CCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 19193 0.66 0.64153
Target:  5'- cGGCGUCGA---UGAUGUucUGGCCGu -3'
miRNA:   3'- -CCGUAGCUggaACUGCGcuACCGGCu -5'
26609 3' -55.3 NC_005357.1 + 21092 0.79 0.122923
Target:  5'- uGGCA---ACCUgGGCGCGGUGGCCGGc -3'
miRNA:   3'- -CCGUagcUGGAaCUGCGCUACCGGCU- -5'
26609 3' -55.3 NC_005357.1 + 23314 0.69 0.499605
Target:  5'- cGGCAcUGGCCgggaUGACGUGGUaGCCGc -3'
miRNA:   3'- -CCGUaGCUGGa---ACUGCGCUAcCGGCu -5'
26609 3' -55.3 NC_005357.1 + 23434 0.67 0.586009
Target:  5'- gGGaCAUCGGCCUgacccuGCGCGAcUGGCg-- -3'
miRNA:   3'- -CC-GUAGCUGGAac----UGCGCU-ACCGgcu -5'
26609 3' -55.3 NC_005357.1 + 23573 0.71 0.373278
Target:  5'- cGGCAggugCGGgCggggGGCGaCGAUGGCCGu -3'
miRNA:   3'- -CCGUa---GCUgGaa--CUGC-GCUACCGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.