miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2661 5' -52.3 NC_001491.2 + 53697 0.66 0.982353
Target:  5'- -cGCGGGACGGgucccaGGCUAGAucgcGGGCAUGg -3'
miRNA:   3'- gcUGUCUUGCCg-----UUGGUCU----CCUGUAC- -5'
2661 5' -52.3 NC_001491.2 + 73125 0.66 0.98023
Target:  5'- gGGCAGaAAUGGCAAacaGGAcGACGUGg -3'
miRNA:   3'- gCUGUC-UUGCCGUUgg-UCUcCUGUAC- -5'
2661 5' -52.3 NC_001491.2 + 3834 0.66 0.98023
Target:  5'- gCGGCA--GCGGCGGCCu--GGGCcgGg -3'
miRNA:   3'- -GCUGUcuUGCCGUUGGucuCCUGuaC- -5'
2661 5' -52.3 NC_001491.2 + 25325 0.66 0.975423
Target:  5'- uCGAgGGggUGGUGGCCGGAG-AgGUGc -3'
miRNA:   3'- -GCUgUCuuGCCGUUGGUCUCcUgUAC- -5'
2661 5' -52.3 NC_001491.2 + 149736 0.67 0.972722
Target:  5'- aGugGGcgUGGCcucCCAGuGGGCGUGg -3'
miRNA:   3'- gCugUCuuGCCGuu-GGUCuCCUGUAC- -5'
2661 5' -52.3 NC_001491.2 + 149770 0.67 0.972722
Target:  5'- aGugGGcgUGGCcucCCAGuGGGCGUGg -3'
miRNA:   3'- gCugUCuuGCCGuu-GGUCuCCUGUAC- -5'
2661 5' -52.3 NC_001491.2 + 149804 0.67 0.972722
Target:  5'- aGugGGcgUGGCcucCCAGuGGGCGUGg -3'
miRNA:   3'- gCugUCuuGCCGuu-GGUCuCCUGUAC- -5'
2661 5' -52.3 NC_001491.2 + 149838 0.67 0.972722
Target:  5'- aGugGGcgUGGCcucCCAGuGGGCGUGg -3'
miRNA:   3'- gCugUCuuGCCGuu-GGUCuCCUGUAC- -5'
2661 5' -52.3 NC_001491.2 + 149872 0.67 0.972722
Target:  5'- aGugGGcgUGGCcucCCAGuGGGCGUGg -3'
miRNA:   3'- gCugUCuuGCCGuu-GGUCuCCUGUAC- -5'
2661 5' -52.3 NC_001491.2 + 149906 0.67 0.972722
Target:  5'- aGugGGcgUGGCcucCCAGuGGGCGUGg -3'
miRNA:   3'- gCugUCuuGCCGuu-GGUCuCCUGUAC- -5'
2661 5' -52.3 NC_001491.2 + 149940 0.67 0.972722
Target:  5'- aGugGGcgUGGCcucCCAGuGGGCGUGg -3'
miRNA:   3'- gCugUCuuGCCGuu-GGUCuCCUGUAC- -5'
2661 5' -52.3 NC_001491.2 + 96998 0.67 0.966689
Target:  5'- aGGCGGGAagccCGGCGuCgGGAGGGcCGUGg -3'
miRNA:   3'- gCUGUCUU----GCCGUuGgUCUCCU-GUAC- -5'
2661 5' -52.3 NC_001491.2 + 31730 0.67 0.959769
Target:  5'- cCGACcugcuGuACGGCAGCCAGA--ACAUGu -3'
miRNA:   3'- -GCUGu----CuUGCCGUUGGUCUccUGUAC- -5'
2661 5' -52.3 NC_001491.2 + 85237 0.68 0.955963
Target:  5'- gGACGGAAUGGCAGcucCCGGcAGGcGCGa- -3'
miRNA:   3'- gCUGUCUUGCCGUU---GGUC-UCC-UGUac -5'
2661 5' -52.3 NC_001491.2 + 49057 0.68 0.943102
Target:  5'- gGGCAGAGCGGgaaAACCAaacAGGGCGg- -3'
miRNA:   3'- gCUGUCUUGCCg--UUGGUc--UCCUGUac -5'
2661 5' -52.3 NC_001491.2 + 4850 0.69 0.933295
Target:  5'- gCGcCGGAGCGGCAGCUcuucGGGGuGGCGg- -3'
miRNA:   3'- -GCuGUCUUGCCGUUGG----UCUC-CUGUac -5'
2661 5' -52.3 NC_001491.2 + 96621 0.69 0.928015
Target:  5'- -cGCGGGAgGGCcuGACCGGAGgGGCGUa -3'
miRNA:   3'- gcUGUCUUgCCG--UUGGUCUC-CUGUAc -5'
2661 5' -52.3 NC_001491.2 + 95613 0.7 0.884077
Target:  5'- -aACAGAGCGGCGGCagcggCGGGGGAUg-- -3'
miRNA:   3'- gcUGUCUUGCCGUUG-----GUCUCCUGuac -5'
2661 5' -52.3 NC_001491.2 + 44161 0.7 0.876831
Target:  5'- gGACAGAcccagcgcgGCGGCAGCCGcggcGAGGcCAa- -3'
miRNA:   3'- gCUGUCU---------UGCCGUUGGU----CUCCuGUac -5'
2661 5' -52.3 NC_001491.2 + 82441 0.71 0.85374
Target:  5'- aCGcCAGGGgGGCGAgCGGGGGAgAUGc -3'
miRNA:   3'- -GCuGUCUUgCCGUUgGUCUCCUgUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.