Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26610 | 5' | -56.9 | NC_005357.1 | + | 13928 | 0.68 | 0.412838 |
Target: 5'- -gGCGAUGuCGCgc-AGCGCC-GUGGa -3' miRNA: 3'- gaCGCUAC-GCGaguUCGCGGaCACCg -5' |
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26610 | 5' | -56.9 | NC_005357.1 | + | 12912 | 0.7 | 0.324776 |
Target: 5'- -gGCGAUGCGCUCGGccGCGCCcauaacGCu -3' miRNA: 3'- gaCGCUACGCGAGUU--CGCGGacac--CG- -5' |
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26610 | 5' | -56.9 | NC_005357.1 | + | 12820 | 0.67 | 0.455981 |
Target: 5'- -aGCGcccgGCGCUgGAcaacuggcaaaccgcGCGCCUG-GGCg -3' miRNA: 3'- gaCGCua--CGCGAgUU---------------CGCGGACaCCG- -5' |
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26610 | 5' | -56.9 | NC_005357.1 | + | 10742 | 0.71 | 0.271918 |
Target: 5'- -gGCGGUGCuGCagCAguuacuGGUGCUUGUGGCc -3' miRNA: 3'- gaCGCUACG-CGa-GU------UCGCGGACACCG- -5' |
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26610 | 5' | -56.9 | NC_005357.1 | + | 8536 | 0.7 | 0.324776 |
Target: 5'- -gGCGAUGaaaCGCUCGAcagccGCGCCgaUGGCg -3' miRNA: 3'- gaCGCUAC---GCGAGUU-----CGCGGacACCG- -5' |
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26610 | 5' | -56.9 | NC_005357.1 | + | 7545 | 0.66 | 0.54659 |
Target: 5'- -gGCGgcGUGCUCGauccgcGGCGCCaccGGCu -3' miRNA: 3'- gaCGCuaCGCGAGU------UCGCGGacaCCG- -5' |
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26610 | 5' | -56.9 | NC_005357.1 | + | 7228 | 0.68 | 0.43214 |
Target: 5'- uCUGCGccGCGCUCAcccucGGCGa-UGUcGGCc -3' miRNA: 3'- -GACGCuaCGCGAGU-----UCGCggACA-CCG- -5' |
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26610 | 5' | -56.9 | NC_005357.1 | + | 5033 | 0.68 | 0.403389 |
Target: 5'- -cGCGAUGCcccGCUCGauGGCGuCCUGcuUGaGCa -3' miRNA: 3'- gaCGCUACG---CGAGU--UCGC-GGAC--AC-CG- -5' |
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26610 | 5' | -56.9 | NC_005357.1 | + | 4580 | 0.66 | 0.535709 |
Target: 5'- gCUGCucGGUGCGC-CAGGCGaggaaCUGcucGGCc -3' miRNA: 3'- -GACG--CUACGCGaGUUCGCg----GACa--CCG- -5' |
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26610 | 5' | -56.9 | NC_005357.1 | + | 4506 | 0.69 | 0.375879 |
Target: 5'- -cGCGcgGCGCcaCAGGCGCUUGaGcGCa -3' miRNA: 3'- gaCGCuaCGCGa-GUUCGCGGACaC-CG- -5' |
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26610 | 5' | -56.9 | NC_005357.1 | + | 4376 | 0.68 | 0.43214 |
Target: 5'- -gGCgGAUGCGCagcCAGGCGCCgucgcgccgGGCc -3' miRNA: 3'- gaCG-CUACGCGa--GUUCGCGGaca------CCG- -5' |
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26610 | 5' | -56.9 | NC_005357.1 | + | 250 | 0.67 | 0.451958 |
Target: 5'- -gGCGGUaGCGaaucccCAGGCGCUUGaGGCa -3' miRNA: 3'- gaCGCUA-CGCga----GUUCGCGGACaCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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