Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26610 | 5' | -56.9 | NC_005357.1 | + | 37913 | 1.03 | 0.001207 |
Target: 5'- uCUGCGAUGCGC-CAAGCGCCUGUGGCg -3' miRNA: 3'- -GACGCUACGCGaGUUCGCGGACACCG- -5' |
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26610 | 5' | -56.9 | NC_005357.1 | + | 29602 | 0.77 | 0.108769 |
Target: 5'- -cGCGGUuugccaguuguccaGCGC-CGGGCGCUUGUGGCc -3' miRNA: 3'- gaCGCUA--------------CGCGaGUUCGCGGACACCG- -5' |
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26610 | 5' | -56.9 | NC_005357.1 | + | 16108 | 0.75 | 0.149925 |
Target: 5'- -cGCGGUGCGCgUCAAgaccGUGCCUGUccguugauGGCa -3' miRNA: 3'- gaCGCUACGCG-AGUU----CGCGGACA--------CCG- -5' |
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26610 | 5' | -56.9 | NC_005357.1 | + | 42167 | 0.72 | 0.226197 |
Target: 5'- -cGCcGUGC-CUCAAGCGCCUG-GGg -3' miRNA: 3'- gaCGcUACGcGAGUUCGCGGACaCCg -5' |
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26610 | 5' | -56.9 | NC_005357.1 | + | 10742 | 0.71 | 0.271918 |
Target: 5'- -gGCGGUGCuGCagCAguuacuGGUGCUUGUGGCc -3' miRNA: 3'- gaCGCUACG-CGa-GU------UCGCGGACACCG- -5' |
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26610 | 5' | -56.9 | NC_005357.1 | + | 40414 | 0.71 | 0.279025 |
Target: 5'- -cGCGAcuuCGCcagCGAGCGCCUG-GGCc -3' miRNA: 3'- gaCGCUac-GCGa--GUUCGCGGACaCCG- -5' |
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26610 | 5' | -56.9 | NC_005357.1 | + | 31835 | 0.7 | 0.316779 |
Target: 5'- aUGCGGUGCagGCUgc-GCGCCUG-GGUa -3' miRNA: 3'- gACGCUACG--CGAguuCGCGGACaCCG- -5' |
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26610 | 5' | -56.9 | NC_005357.1 | + | 8536 | 0.7 | 0.324776 |
Target: 5'- -gGCGAUGaaaCGCUCGAcagccGCGCCgaUGGCg -3' miRNA: 3'- gaCGCUAC---GCGAGUU-----CGCGGacACCG- -5' |
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26610 | 5' | -56.9 | NC_005357.1 | + | 12912 | 0.7 | 0.324776 |
Target: 5'- -gGCGAUGCGCUCGGccGCGCCcauaacGCu -3' miRNA: 3'- gaCGCUACGCGAGUU--CGCGGacac--CG- -5' |
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26610 | 5' | -56.9 | NC_005357.1 | + | 38881 | 0.69 | 0.332923 |
Target: 5'- gCUGC--UGCGCUauucggcGGCGCCUGgaacGGCa -3' miRNA: 3'- -GACGcuACGCGAgu-----UCGCGGACa---CCG- -5' |
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26610 | 5' | -56.9 | NC_005357.1 | + | 30080 | 0.69 | 0.349663 |
Target: 5'- uUGUGcgGCGCcCGGGCGCCac-GGCc -3' miRNA: 3'- gACGCuaCGCGaGUUCGCGGacaCCG- -5' |
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26610 | 5' | -56.9 | NC_005357.1 | + | 4506 | 0.69 | 0.375879 |
Target: 5'- -cGCGcgGCGCcaCAGGCGCUUGaGcGCa -3' miRNA: 3'- gaCGCuaCGCGa-GUUCGCGGACaC-CG- -5' |
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26610 | 5' | -56.9 | NC_005357.1 | + | 28760 | 0.68 | 0.394078 |
Target: 5'- -cGCGGUGCGCUUcucGGCGCgcacGGCg -3' miRNA: 3'- gaCGCUACGCGAGu--UCGCGgacaCCG- -5' |
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26610 | 5' | -56.9 | NC_005357.1 | + | 5033 | 0.68 | 0.403389 |
Target: 5'- -cGCGAUGCcccGCUCGauGGCGuCCUGcuUGaGCa -3' miRNA: 3'- gaCGCUACG---CGAGU--UCGC-GGAC--AC-CG- -5' |
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26610 | 5' | -56.9 | NC_005357.1 | + | 13928 | 0.68 | 0.412838 |
Target: 5'- -gGCGAUGuCGCgc-AGCGCC-GUGGa -3' miRNA: 3'- gaCGCUAC-GCGaguUCGCGGaCACCg -5' |
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26610 | 5' | -56.9 | NC_005357.1 | + | 35635 | 0.68 | 0.412838 |
Target: 5'- -aGCGAUGCGCaagUCAAGgCGCUgaaccaGGCc -3' miRNA: 3'- gaCGCUACGCG---AGUUC-GCGGaca---CCG- -5' |
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26610 | 5' | -56.9 | NC_005357.1 | + | 7228 | 0.68 | 0.43214 |
Target: 5'- uCUGCGccGCGCUCAcccucGGCGa-UGUcGGCc -3' miRNA: 3'- -GACGCuaCGCGAGU-----UCGCggACA-CCG- -5' |
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26610 | 5' | -56.9 | NC_005357.1 | + | 4376 | 0.68 | 0.43214 |
Target: 5'- -gGCgGAUGCGCagcCAGGCGCCgucgcgccgGGCc -3' miRNA: 3'- gaCG-CUACGCGa--GUUCGCGGaca------CCG- -5' |
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26610 | 5' | -56.9 | NC_005357.1 | + | 19477 | 0.67 | 0.441986 |
Target: 5'- -aGCu-UGCGC-CAGGUGCCgGUGGg -3' miRNA: 3'- gaCGcuACGCGaGUUCGCGGaCACCg -5' |
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26610 | 5' | -56.9 | NC_005357.1 | + | 26168 | 0.67 | 0.451958 |
Target: 5'- uCUGCGAUGCGgUCGcAGauuUCgGUGGCg -3' miRNA: 3'- -GACGCUACGCgAGU-UCgc-GGaCACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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