miRNA display CGI


Results 41 - 60 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26611 3' -56.3 NC_005357.1 + 5286 0.69 0.406912
Target:  5'- aGCgU-CGAUUGCUGCAUGUcuggcaggUCGAGGCc -3'
miRNA:   3'- -UGgAuGCUGACGGCGUGCG--------AGUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 26156 0.69 0.406912
Target:  5'- aGCCUucCGGgUgGCCGCGCGC--GAGGCc -3'
miRNA:   3'- -UGGAu-GCUgA-CGGCGUGCGagUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 24026 0.69 0.416398
Target:  5'- cACCUucgcCGACgugGCCGCcaccgGCGCcaucggCAAGGCc -3'
miRNA:   3'- -UGGAu---GCUGa--CGGCG-----UGCGa-----GUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 11187 0.68 0.44565
Target:  5'- cGCC--CGGCUcguagcuggGCCGCGCGC-CGGGGUu -3'
miRNA:   3'- -UGGauGCUGA---------CGGCGUGCGaGUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 31009 0.68 0.455653
Target:  5'- gACCUGCacgccGGCUcGCCGC-UGCUCAAGa- -3'
miRNA:   3'- -UGGAUG-----CUGA-CGGCGuGCGAGUUCcg -5'
26611 3' -56.3 NC_005357.1 + 8472 0.68 0.455653
Target:  5'- gGCCUGCGA-UGCCGCA-GC-CGAcGCg -3'
miRNA:   3'- -UGGAUGCUgACGGCGUgCGaGUUcCG- -5'
26611 3' -56.3 NC_005357.1 + 27705 0.68 0.465776
Target:  5'- uGCCUGgGGCUaCCGgGCGC--AGGGCa -3'
miRNA:   3'- -UGGAUgCUGAcGGCgUGCGagUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 35585 0.7 0.344448
Target:  5'- gGCCUACGAaaagGCCGU-CGC-CGAGGg -3'
miRNA:   3'- -UGGAUGCUga--CGGCGuGCGaGUUCCg -5'
26611 3' -56.3 NC_005357.1 + 19726 0.71 0.31987
Target:  5'- aACCgaGCGcaaACUGCUGCuuucGCGCUgGGGGCa -3'
miRNA:   3'- -UGGa-UGC---UGACGGCG----UGCGAgUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 18686 0.77 0.124553
Target:  5'- cGCCggcaugGCG-CUGCUGCGCGCcacCGAGGCa -3'
miRNA:   3'- -UGGa-----UGCuGACGGCGUGCGa--GUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 41319 0.76 0.151736
Target:  5'- gGCCgaugcGCGACaUGCCGCGCGacacggcCAAGGCa -3'
miRNA:   3'- -UGGa----UGCUG-ACGGCGUGCga-----GUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 17124 0.75 0.169594
Target:  5'- cGCCggugGCagGGCcgGCCGCACGacCUCAAGGCa -3'
miRNA:   3'- -UGGa---UG--CUGa-CGGCGUGC--GAGUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 19812 0.74 0.179212
Target:  5'- -aCUACcuGCUGCCGCGCGCg--GGGCg -3'
miRNA:   3'- ugGAUGc-UGACGGCGUGCGaguUCCG- -5'
26611 3' -56.3 NC_005357.1 + 19246 0.74 0.1842
Target:  5'- gACCUGCuGCUGUCGCACcaGCagGGGGCc -3'
miRNA:   3'- -UGGAUGcUGACGGCGUG--CGagUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 26357 0.74 0.1842
Target:  5'- cAUCUACGGC-GCCGCGCGCggc-GGCc -3'
miRNA:   3'- -UGGAUGCUGaCGGCGUGCGaguuCCG- -5'
26611 3' -56.3 NC_005357.1 + 7715 0.73 0.222648
Target:  5'- uGCCgAUGaACUGCagCGCACGCUCGGcGGCc -3'
miRNA:   3'- -UGGaUGC-UGACG--GCGUGCGAGUU-CCG- -5'
26611 3' -56.3 NC_005357.1 + 19329 0.73 0.241119
Target:  5'- cGCCguggGCG-CcGCCGUugGCgUCGGGGCg -3'
miRNA:   3'- -UGGa---UGCuGaCGGCGugCG-AGUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 12950 0.71 0.281879
Target:  5'- gACCgacGCGGaacugGCCGCGCGCUCGucGCc -3'
miRNA:   3'- -UGGa--UGCUga---CGGCGUGCGAGUucCG- -5'
26611 3' -56.3 NC_005357.1 + 34311 0.71 0.311975
Target:  5'- aACCaACGcCgGCCGCGCGgUgCAGGGCc -3'
miRNA:   3'- -UGGaUGCuGaCGGCGUGCgA-GUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 24794 0.71 0.318279
Target:  5'- gGCCgu--ACUGCCGCACGaugcggcaaacaUCGAGGCc -3'
miRNA:   3'- -UGGaugcUGACGGCGUGCg-----------AGUUCCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.