Results 41 - 60 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26611 | 3' | -56.3 | NC_005357.1 | + | 5286 | 0.69 | 0.406912 |
Target: 5'- aGCgU-CGAUUGCUGCAUGUcuggcaggUCGAGGCc -3' miRNA: 3'- -UGgAuGCUGACGGCGUGCG--------AGUUCCG- -5' |
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26611 | 3' | -56.3 | NC_005357.1 | + | 26156 | 0.69 | 0.406912 |
Target: 5'- aGCCUucCGGgUgGCCGCGCGC--GAGGCc -3' miRNA: 3'- -UGGAu-GCUgA-CGGCGUGCGagUUCCG- -5' |
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26611 | 3' | -56.3 | NC_005357.1 | + | 24026 | 0.69 | 0.416398 |
Target: 5'- cACCUucgcCGACgugGCCGCcaccgGCGCcaucggCAAGGCc -3' miRNA: 3'- -UGGAu---GCUGa--CGGCG-----UGCGa-----GUUCCG- -5' |
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26611 | 3' | -56.3 | NC_005357.1 | + | 11187 | 0.68 | 0.44565 |
Target: 5'- cGCC--CGGCUcguagcuggGCCGCGCGC-CGGGGUu -3' miRNA: 3'- -UGGauGCUGA---------CGGCGUGCGaGUUCCG- -5' |
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26611 | 3' | -56.3 | NC_005357.1 | + | 31009 | 0.68 | 0.455653 |
Target: 5'- gACCUGCacgccGGCUcGCCGC-UGCUCAAGa- -3' miRNA: 3'- -UGGAUG-----CUGA-CGGCGuGCGAGUUCcg -5' |
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26611 | 3' | -56.3 | NC_005357.1 | + | 8472 | 0.68 | 0.455653 |
Target: 5'- gGCCUGCGA-UGCCGCA-GC-CGAcGCg -3' miRNA: 3'- -UGGAUGCUgACGGCGUgCGaGUUcCG- -5' |
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26611 | 3' | -56.3 | NC_005357.1 | + | 27705 | 0.68 | 0.465776 |
Target: 5'- uGCCUGgGGCUaCCGgGCGC--AGGGCa -3' miRNA: 3'- -UGGAUgCUGAcGGCgUGCGagUUCCG- -5' |
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26611 | 3' | -56.3 | NC_005357.1 | + | 35585 | 0.7 | 0.344448 |
Target: 5'- gGCCUACGAaaagGCCGU-CGC-CGAGGg -3' miRNA: 3'- -UGGAUGCUga--CGGCGuGCGaGUUCCg -5' |
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26611 | 3' | -56.3 | NC_005357.1 | + | 19726 | 0.71 | 0.31987 |
Target: 5'- aACCgaGCGcaaACUGCUGCuuucGCGCUgGGGGCa -3' miRNA: 3'- -UGGa-UGC---UGACGGCG----UGCGAgUUCCG- -5' |
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26611 | 3' | -56.3 | NC_005357.1 | + | 18686 | 0.77 | 0.124553 |
Target: 5'- cGCCggcaugGCG-CUGCUGCGCGCcacCGAGGCa -3' miRNA: 3'- -UGGa-----UGCuGACGGCGUGCGa--GUUCCG- -5' |
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26611 | 3' | -56.3 | NC_005357.1 | + | 41319 | 0.76 | 0.151736 |
Target: 5'- gGCCgaugcGCGACaUGCCGCGCGacacggcCAAGGCa -3' miRNA: 3'- -UGGa----UGCUG-ACGGCGUGCga-----GUUCCG- -5' |
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26611 | 3' | -56.3 | NC_005357.1 | + | 17124 | 0.75 | 0.169594 |
Target: 5'- cGCCggugGCagGGCcgGCCGCACGacCUCAAGGCa -3' miRNA: 3'- -UGGa---UG--CUGa-CGGCGUGC--GAGUUCCG- -5' |
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26611 | 3' | -56.3 | NC_005357.1 | + | 19812 | 0.74 | 0.179212 |
Target: 5'- -aCUACcuGCUGCCGCGCGCg--GGGCg -3' miRNA: 3'- ugGAUGc-UGACGGCGUGCGaguUCCG- -5' |
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26611 | 3' | -56.3 | NC_005357.1 | + | 19246 | 0.74 | 0.1842 |
Target: 5'- gACCUGCuGCUGUCGCACcaGCagGGGGCc -3' miRNA: 3'- -UGGAUGcUGACGGCGUG--CGagUUCCG- -5' |
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26611 | 3' | -56.3 | NC_005357.1 | + | 26357 | 0.74 | 0.1842 |
Target: 5'- cAUCUACGGC-GCCGCGCGCggc-GGCc -3' miRNA: 3'- -UGGAUGCUGaCGGCGUGCGaguuCCG- -5' |
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26611 | 3' | -56.3 | NC_005357.1 | + | 7715 | 0.73 | 0.222648 |
Target: 5'- uGCCgAUGaACUGCagCGCACGCUCGGcGGCc -3' miRNA: 3'- -UGGaUGC-UGACG--GCGUGCGAGUU-CCG- -5' |
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26611 | 3' | -56.3 | NC_005357.1 | + | 19329 | 0.73 | 0.241119 |
Target: 5'- cGCCguggGCG-CcGCCGUugGCgUCGGGGCg -3' miRNA: 3'- -UGGa---UGCuGaCGGCGugCG-AGUUCCG- -5' |
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26611 | 3' | -56.3 | NC_005357.1 | + | 12950 | 0.71 | 0.281879 |
Target: 5'- gACCgacGCGGaacugGCCGCGCGCUCGucGCc -3' miRNA: 3'- -UGGa--UGCUga---CGGCGUGCGAGUucCG- -5' |
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26611 | 3' | -56.3 | NC_005357.1 | + | 34311 | 0.71 | 0.311975 |
Target: 5'- aACCaACGcCgGCCGCGCGgUgCAGGGCc -3' miRNA: 3'- -UGGaUGCuGaCGGCGUGCgA-GUUCCG- -5' |
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26611 | 3' | -56.3 | NC_005357.1 | + | 24794 | 0.71 | 0.318279 |
Target: 5'- gGCCgu--ACUGCCGCACGaugcggcaaacaUCGAGGCc -3' miRNA: 3'- -UGGaugcUGACGGCGUGCg-----------AGUUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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