miRNA display CGI


Results 41 - 60 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26611 3' -56.3 NC_005357.1 + 20305 0.66 0.572441
Target:  5'- aGCCUGuuCGACcGCgGCGCGCUgGaacaguGGGUu -3'
miRNA:   3'- -UGGAU--GCUGaCGgCGUGCGAgU------UCCG- -5'
26611 3' -56.3 NC_005357.1 + 29124 0.67 0.486363
Target:  5'- cGCCUACaACgccgGCCccgGCGCGCUgCAAucGGCg -3'
miRNA:   3'- -UGGAUGcUGa---CGG---CGUGCGA-GUU--CCG- -5'
26611 3' -56.3 NC_005357.1 + 40026 0.68 0.476014
Target:  5'- cACCUACGcUUGCCGCccugacaaggguACGCaCGcGGGCg -3'
miRNA:   3'- -UGGAUGCuGACGGCG------------UGCGaGU-UCCG- -5'
26611 3' -56.3 NC_005357.1 + 14328 0.66 0.583509
Target:  5'- cGCCUugGcugaACUGCCgggccuGCugGUUCGcGGUg -3'
miRNA:   3'- -UGGAugC----UGACGG------CGugCGAGUuCCG- -5'
26611 3' -56.3 NC_005357.1 + 16137 0.71 0.288444
Target:  5'- gACgUAgGACUgcgGCCGCACGCUgAuggugguGGGCg -3'
miRNA:   3'- -UGgAUgCUGA---CGGCGUGCGAgU-------UCCG- -5'
26611 3' -56.3 NC_005357.1 + 37929 0.72 0.247555
Target:  5'- cGCCUGUGGC-GCCGCGCGCaUCc-GGCg -3'
miRNA:   3'- -UGGAUGCUGaCGGCGUGCG-AGuuCCG- -5'
26611 3' -56.3 NC_005357.1 + 24163 0.75 0.156034
Target:  5'- cGCCU-CGACgGCUGCGCGCUUc-GGCg -3'
miRNA:   3'- -UGGAuGCUGaCGGCGUGCGAGuuCCG- -5'
26611 3' -56.3 NC_005357.1 + 26338 0.7 0.352937
Target:  5'- cACC-GCGAacugGCCGCGcCGCUCGuaucGGCa -3'
miRNA:   3'- -UGGaUGCUga--CGGCGU-GCGAGUu---CCG- -5'
26611 3' -56.3 NC_005357.1 + 40456 0.69 0.380182
Target:  5'- cGCCUACaGCgugccuucccccaggGCCGCGCGCUCGAc-- -3'
miRNA:   3'- -UGGAUGcUGa--------------CGGCGUGCGAGUUccg -5'
26611 3' -56.3 NC_005357.1 + 35361 0.69 0.397562
Target:  5'- aGCCUguucaaACGAC-GCUGC-CGCcCGAGGCc -3'
miRNA:   3'- -UGGA------UGCUGaCGGCGuGCGaGUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 24422 0.66 0.549374
Target:  5'- aGCCggccCGAUuugucggUGCCGCGCGCggcCucGGCg -3'
miRNA:   3'- -UGGau--GCUG-------ACGGCGUGCGa--GuuCCG- -5'
26611 3' -56.3 NC_005357.1 + 16732 0.66 0.539575
Target:  5'- cCCUuguuguuCGACgugGCgGuCACGCUCGuGGGCg -3'
miRNA:   3'- uGGAu------GCUGa--CGgC-GUGCGAGU-UCCG- -5'
26611 3' -56.3 NC_005357.1 + 444 0.66 0.539575
Target:  5'- uCgUugGGCUGCUGCGCggccaGCUUGcGGGCg -3'
miRNA:   3'- uGgAugCUGACGGCGUG-----CGAGU-UCCG- -5'
26611 3' -56.3 NC_005357.1 + 11492 0.66 0.536321
Target:  5'- cGCCUGCGACa-CCGCaaagggcagcgccuGCGCUggcgUGAGGCc -3'
miRNA:   3'- -UGGAUGCUGacGGCG--------------UGCGA----GUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 27507 0.67 0.518021
Target:  5'- gGCCU-CGGCcGCCagcuucucgGCGCGgUCGGGGUc -3'
miRNA:   3'- -UGGAuGCUGaCGG---------CGUGCgAGUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 16107 0.68 0.476014
Target:  5'- gACC-ACGACcgGCUGCACG-UCGGuGGCc -3'
miRNA:   3'- -UGGaUGCUGa-CGGCGUGCgAGUU-CCG- -5'
26611 3' -56.3 NC_005357.1 + 9202 0.68 0.476014
Target:  5'- gGCCUgcucgGCGGCgcGgCGCACGUUCugcGGCg -3'
miRNA:   3'- -UGGA-----UGCUGa-CgGCGUGCGAGuu-CCG- -5'
26611 3' -56.3 NC_005357.1 + 36417 0.68 0.465776
Target:  5'- uGCCUAUccaGAacgGCaCGCACGCUUAcgccgagaAGGCa -3'
miRNA:   3'- -UGGAUG---CUga-CG-GCGUGCGAGU--------UCCG- -5'
26611 3' -56.3 NC_005357.1 + 23504 0.69 0.416398
Target:  5'- gACCUGCGGCaguuccGCgaGCGCGCcuUCcAGGCg -3'
miRNA:   3'- -UGGAUGCUGa-----CGg-CGUGCG--AGuUCCG- -5'
26611 3' -56.3 NC_005357.1 + 4936 0.69 0.406912
Target:  5'- uGCCcGCGACgGuCUGCACGUcugCGAGGUu -3'
miRNA:   3'- -UGGaUGCUGaC-GGCGUGCGa--GUUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.