miRNA display CGI


Results 41 - 60 of 78 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26611 3' -56.3 NC_005357.1 + 36673 0.68 0.435771
Target:  5'- gGCCcugGCGcacucGCUGCCcgGCGCGCU--GGGCg -3'
miRNA:   3'- -UGGa--UGC-----UGACGG--CGUGCGAguUCCG- -5'
26611 3' -56.3 NC_005357.1 + 24026 0.69 0.416398
Target:  5'- cACCUucgcCGACgugGCCGCcaccgGCGCcaucggCAAGGCc -3'
miRNA:   3'- -UGGAu---GCUGa--CGGCG-----UGCGa-----GUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 23504 0.69 0.416398
Target:  5'- gACCUGCGGCaguuccGCgaGCGCGCcuUCcAGGCg -3'
miRNA:   3'- -UGGAUGCUGa-----CGg-CGUGCG--AGuUCCG- -5'
26611 3' -56.3 NC_005357.1 + 4936 0.69 0.406912
Target:  5'- uGCCcGCGACgGuCUGCACGUcugCGAGGUu -3'
miRNA:   3'- -UGGaUGCUGaC-GGCGUGCGa--GUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 26156 0.69 0.406912
Target:  5'- aGCCUucCGGgUgGCCGCGCGC--GAGGCc -3'
miRNA:   3'- -UGGAu-GCUgA-CGGCGUGCGagUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 5286 0.69 0.406912
Target:  5'- aGCgU-CGAUUGCUGCAUGUcuggcaggUCGAGGCc -3'
miRNA:   3'- -UGgAuGCUGACGGCGUGCG--------AGUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 35361 0.69 0.397562
Target:  5'- aGCCUguucaaACGAC-GCUGC-CGCcCGAGGCc -3'
miRNA:   3'- -UGGA------UGCUGaCGGCGuGCGaGUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 7155 0.69 0.388351
Target:  5'- gGCCUggAUGACcaggGCCGgGCGCUUgucggauucgGGGGCg -3'
miRNA:   3'- -UGGA--UGCUGa---CGGCgUGCGAG----------UUCCG- -5'
26611 3' -56.3 NC_005357.1 + 18238 0.69 0.382892
Target:  5'- cGCCUACGuGCUcgcgcucauggacacGCCgaaGCGCGCagccgUCGAGGCg -3'
miRNA:   3'- -UGGAUGC-UGA---------------CGG---CGUGCG-----AGUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 40456 0.69 0.380182
Target:  5'- cGCCUACaGCgugccuucccccaggGCCGCGCGCUCGAc-- -3'
miRNA:   3'- -UGGAUGcUGa--------------CGGCGUGCGAGUUccg -5'
26611 3' -56.3 NC_005357.1 + 13739 0.69 0.379281
Target:  5'- gACCUugugaACGACgugGCgCGcCGCGCUggCGAGGCc -3'
miRNA:   3'- -UGGA-----UGCUGa--CG-GC-GUGCGA--GUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 19008 0.69 0.370355
Target:  5'- gGCCgGCGucgcACUGaCCgGCGCGCUCAucaAGGUa -3'
miRNA:   3'- -UGGaUGC----UGAC-GG-CGUGCGAGU---UCCG- -5'
26611 3' -56.3 NC_005357.1 + 21822 0.7 0.352937
Target:  5'- gACCUGCGAC-GCCGcCugGCg-AAGGa -3'
miRNA:   3'- -UGGAUGCUGaCGGC-GugCGagUUCCg -5'
26611 3' -56.3 NC_005357.1 + 26338 0.7 0.352937
Target:  5'- cACC-GCGAacugGCCGCGcCGCUCGuaucGGCa -3'
miRNA:   3'- -UGGaUGCUga--CGGCGU-GCGAGUu---CCG- -5'
26611 3' -56.3 NC_005357.1 + 35585 0.7 0.344448
Target:  5'- gGCCUACGAaaagGCCGU-CGC-CGAGGg -3'
miRNA:   3'- -UGGAUGCUga--CGGCGuGCGaGUUCCg -5'
26611 3' -56.3 NC_005357.1 + 31358 0.7 0.327914
Target:  5'- uACCUGgaagaaGACgGCCGgAagcUGCUCAAGGCg -3'
miRNA:   3'- -UGGAUg-----CUGaCGGCgU---GCGAGUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 19726 0.71 0.31987
Target:  5'- aACCgaGCGcaaACUGCUGCuuucGCGCUgGGGGCa -3'
miRNA:   3'- -UGGa-UGC---UGACGGCG----UGCGAgUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 24794 0.71 0.318279
Target:  5'- gGCCgu--ACUGCCGCACGaugcggcaaacaUCGAGGCc -3'
miRNA:   3'- -UGGaugcUGACGGCGUGCg-----------AGUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 34311 0.71 0.311975
Target:  5'- aACCaACGcCgGCCGCGCGgUgCAGGGCc -3'
miRNA:   3'- -UGGaUGCuGaCGGCGUGCgA-GUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 39027 0.71 0.304228
Target:  5'- cGCCUACGAaaaugGCCGCGugugggUGCUCAAGa- -3'
miRNA:   3'- -UGGAUGCUga---CGGCGU------GCGAGUUCcg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.