miRNA display CGI


Results 61 - 70 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26611 5' -62.8 NC_005357.1 + 37927 0.67 0.239453
Target:  5'- -aGCGCCugUGGCgccgcGCGCAUCCGgCgGUu -3'
miRNA:   3'- gcCGCGG--ACCGa----CGCGUAGGCgGaCG- -5'
26611 5' -62.8 NC_005357.1 + 8601 0.67 0.233439
Target:  5'- nGGUGCuggauaagCUGGUUGCGCuucUCgGCCgcUGCg -3'
miRNA:   3'- gCCGCG--------GACCGACGCGu--AGgCGG--ACG- -5'
26611 5' -62.8 NC_005357.1 + 2341 0.67 0.227553
Target:  5'- -aGUGCgUGGC-GCGCGUgCGCC-GCa -3'
miRNA:   3'- gcCGCGgACCGaCGCGUAgGCGGaCG- -5'
26611 5' -62.8 NC_005357.1 + 20748 0.67 0.227553
Target:  5'- uGGCGCCguagagGcGCUGCGCcgcgcucgacucAUCgCGCggCUGCa -3'
miRNA:   3'- gCCGCGGa-----C-CGACGCG------------UAG-GCG--GACG- -5'
26611 5' -62.8 NC_005357.1 + 27842 0.67 0.221793
Target:  5'- uGGCGCC-GGCcGCGCcgCUGCUc-- -3'
miRNA:   3'- gCCGCGGaCCGaCGCGuaGGCGGacg -5'
26611 5' -62.8 NC_005357.1 + 21190 0.67 0.221793
Target:  5'- gCGGCcuGCugCUGGuCUGCGCGU-UGCUUGCg -3'
miRNA:   3'- -GCCG--CG--GACC-GACGCGUAgGCGGACG- -5'
26611 5' -62.8 NC_005357.1 + 14401 0.67 0.221793
Target:  5'- aGGCGUagcgaaGCUGgGCGUCgccaggcgCGCCUGCg -3'
miRNA:   3'- gCCGCGgac---CGACgCGUAG--------GCGGACG- -5'
26611 5' -62.8 NC_005357.1 + 2243 0.67 0.216157
Target:  5'- gCGGCGCgUGGCcGCGCAaugaaUCUuCUUGUc -3'
miRNA:   3'- -GCCGCGgACCGaCGCGU-----AGGcGGACG- -5'
26611 5' -62.8 NC_005357.1 + 38902 0.68 0.210645
Target:  5'- gCGGUGUgcGGCUGUaugucuuaaGUGUCCGCaCUGCa -3'
miRNA:   3'- -GCCGCGgaCCGACG---------CGUAGGCG-GACG- -5'
26611 5' -62.8 NC_005357.1 + 38053 1.1 0.0001
Target:  5'- aCGGCGCCUGGCUGCGCAUCCGCCUGCc -3'
miRNA:   3'- -GCCGCGGACCGACGCGUAGGCGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.