Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26612 | 3' | -50.1 | NC_005357.1 | + | 29124 | 0.66 | 0.896344 |
Target: 5'- ----cGGUCACGCgCgCGAGGCC-GCa -3' miRNA: 3'- cuuuaCCAGUGCG-GaGUUCUGGaUGc -5' |
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26612 | 3' | -50.1 | NC_005357.1 | + | 24549 | 0.66 | 0.884055 |
Target: 5'- --cGUGGUCGCGCagcgcggcgauggCGAGGCCggccACGg -3' miRNA: 3'- cuuUACCAGUGCGga-----------GUUCUGGa---UGC- -5' |
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26612 | 3' | -50.1 | NC_005357.1 | + | 26163 | 0.66 | 0.880866 |
Target: 5'- cGGGUGGcCGCGCg-CGAGGCCaACGc -3' miRNA: 3'- cUUUACCaGUGCGgaGUUCUGGaUGC- -5' |
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26612 | 3' | -50.1 | NC_005357.1 | + | 25323 | 0.67 | 0.864243 |
Target: 5'- --cGUGGUCAaGCCcCAAGGCCcgGCc -3' miRNA: 3'- cuuUACCAGUgCGGaGUUCUGGa-UGc -5' |
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26612 | 3' | -50.1 | NC_005357.1 | + | 14967 | 0.67 | 0.860786 |
Target: 5'- --cGUGGcggCGCGCUggcauaccagcgcCAGGGCCUGCGg -3' miRNA: 3'- cuuUACCa--GUGCGGa------------GUUCUGGAUGC- -5' |
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26612 | 3' | -50.1 | NC_005357.1 | + | 21386 | 0.67 | 0.85552 |
Target: 5'- -cAAUGG-CGCGCU---GGGCCUGCGc -3' miRNA: 3'- cuUUACCaGUGCGGaguUCUGGAUGC- -5' |
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26612 | 3' | -50.1 | NC_005357.1 | + | 13750 | 0.67 | 0.846536 |
Target: 5'- cGAcGUGG-CGCGCCgcgcuggCGAGGCCgccgGCa -3' miRNA: 3'- -CUuUACCaGUGCGGa------GUUCUGGa---UGc -5' |
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26612 | 3' | -50.1 | NC_005357.1 | + | 14316 | 0.67 | 0.837299 |
Target: 5'- uGAAcUGGcgCGCGCCUUGgcugaacugccGGGCCUGCu -3' miRNA: 3'- -CUUuACCa-GUGCGGAGU-----------UCUGGAUGc -5' |
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26612 | 3' | -50.1 | NC_005357.1 | + | 32992 | 0.67 | 0.837299 |
Target: 5'- --cGUGGaCGCGaCCaacgacgcuauUCAAGACCUGCa -3' miRNA: 3'- cuuUACCaGUGC-GG-----------AGUUCUGGAUGc -5' |
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26612 | 3' | -50.1 | NC_005357.1 | + | 8615 | 0.68 | 0.808182 |
Target: 5'- ---cUGGUUGCGCUUCucGGCCgcUGCGg -3' miRNA: 3'- cuuuACCAGUGCGGAGuuCUGG--AUGC- -5' |
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26612 | 3' | -50.1 | NC_005357.1 | + | 29097 | 0.68 | 0.808182 |
Target: 5'- ----aGGUCAgGCCcgugCGGGACUUGCu -3' miRNA: 3'- cuuuaCCAGUgCGGa---GUUCUGGAUGc -5' |
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26612 | 3' | -50.1 | NC_005357.1 | + | 19084 | 0.68 | 0.798046 |
Target: 5'- ----aGGUCACGCgauugCAGGccgGCCUGCGa -3' miRNA: 3'- cuuuaCCAGUGCGga---GUUC---UGGAUGC- -5' |
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26612 | 3' | -50.1 | NC_005357.1 | + | 35086 | 0.69 | 0.777204 |
Target: 5'- ----aGGUCGaggcCGCgCUCAAGGCCaUGCGu -3' miRNA: 3'- cuuuaCCAGU----GCG-GAGUUCUGG-AUGC- -5' |
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26612 | 3' | -50.1 | NC_005357.1 | + | 30990 | 0.7 | 0.676645 |
Target: 5'- ----gGuGUCGCGCCUUAucggcGACCUGCa -3' miRNA: 3'- cuuuaC-CAGUGCGGAGUu----CUGGAUGc -5' |
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26612 | 3' | -50.1 | NC_005357.1 | + | 38164 | 1.1 | 0.001998 |
Target: 5'- gGAAAUGGUCACGCCUCAAGACCUACGg -3' miRNA: 3'- -CUUUACCAGUGCGGAGUUCUGGAUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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