miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26612 5' -57.3 NC_005357.1 + 9338 0.66 0.52186
Target:  5'- aUGgGCGAGgaUGUAGGCCGCcGCGUcGCu -3'
miRNA:   3'- -AUgCGUUCg-GCGUUCGGCGcUGCA-CG- -5'
26612 5' -57.3 NC_005357.1 + 4381 0.66 0.511194
Target:  5'- aUGCGCAGccaggcGCCGuCGcGCCGgGccuugaGCGUGCg -3'
miRNA:   3'- -AUGCGUU------CGGC-GUuCGGCgC------UGCACG- -5'
26612 5' -57.3 NC_005357.1 + 39842 0.66 0.47977
Target:  5'- -uUGCAacagGGCgGCAAGCgCGCGcACGcGCu -3'
miRNA:   3'- auGCGU----UCGgCGUUCG-GCGC-UGCaCG- -5'
26612 5' -57.3 NC_005357.1 + 39605 0.66 0.489101
Target:  5'- cUGCGCGuGGCCGCGagcaccuGGCC-CGACGa-- -3'
miRNA:   3'- -AUGCGU-UCGGCGU-------UCGGcGCUGCacg -5'
26612 5' -57.3 NC_005357.1 + 3155 0.66 0.490143
Target:  5'- aGCGCAaccaaaaucgcAGCaugGCAAGCC-CGGCGUccGCu -3'
miRNA:   3'- aUGCGU-----------UCGg--CGUUCGGcGCUGCA--CG- -5'
26612 5' -57.3 NC_005357.1 + 18454 0.66 0.490143
Target:  5'- aACGUGacGGUCGCGGcGCCGgCGGCGUcgGCc -3'
miRNA:   3'- aUGCGU--UCGGCGUU-CGGC-GCUGCA--CG- -5'
26612 5' -57.3 NC_005357.1 + 8619 0.66 0.50062
Target:  5'- uUGCGCuucucGGCCGCugcGGUgGCGAgGUcGCc -3'
miRNA:   3'- -AUGCGu----UCGGCGu--UCGgCGCUgCA-CG- -5'
26612 5' -57.3 NC_005357.1 + 9721 0.66 0.511194
Target:  5'- aUACGCcucgAAGCCGCGGGCgaacUGCucGugGUGg -3'
miRNA:   3'- -AUGCG----UUCGGCGUUCG----GCG--CugCACg -5'
26612 5' -57.3 NC_005357.1 + 18042 0.66 0.50062
Target:  5'- --gGCGGGCUGCuuggGGGCCuuaccggcGCGGgGUGCg -3'
miRNA:   3'- augCGUUCGGCG----UUCGG--------CGCUgCACG- -5'
26612 5' -57.3 NC_005357.1 + 31294 0.66 0.50062
Target:  5'- aGCG-AAGCCugGCGA-CCGCGugGUGg -3'
miRNA:   3'- aUGCgUUCGG--CGUUcGGCGCugCACg -5'
26612 5' -57.3 NC_005357.1 + 25205 0.66 0.50062
Target:  5'- cGCGCGA-CCGCuGGCC-CGGCuuguugGUGCg -3'
miRNA:   3'- aUGCGUUcGGCGuUCGGcGCUG------CACG- -5'
26612 5' -57.3 NC_005357.1 + 12007 0.66 0.511194
Target:  5'- cACGUcGGCCaGCAgcgcGGCCGUGGcCG-GCg -3'
miRNA:   3'- aUGCGuUCGG-CGU----UCGGCGCU-GCaCG- -5'
26612 5' -57.3 NC_005357.1 + 24555 0.67 0.443359
Target:  5'- cGCGCAgcgcggcgauggcgaGGCCGgccacgguCGGGCCGUccGGCGUGUc -3'
miRNA:   3'- aUGCGU---------------UCGGC--------GUUCGGCG--CUGCACG- -5'
26612 5' -57.3 NC_005357.1 + 19495 0.67 0.459354
Target:  5'- gUGgGCAGGCCGCugcgaaCCGUGGucuUGUGCu -3'
miRNA:   3'- -AUgCGUUCGGCGuuc---GGCGCU---GCACG- -5'
26612 5' -57.3 NC_005357.1 + 26827 0.67 0.459354
Target:  5'- uUugGCAGGCUGCGccGCCcCGAUGgagcggGCg -3'
miRNA:   3'- -AugCGUUCGGCGUu-CGGcGCUGCa-----CG- -5'
26612 5' -57.3 NC_005357.1 + 19844 0.67 0.469505
Target:  5'- -gUGCAAGaUCGCAA-CCGCGGCGagaaGCg -3'
miRNA:   3'- auGCGUUC-GGCGUUcGGCGCUGCa---CG- -5'
26612 5' -57.3 NC_005357.1 + 17227 0.67 0.459354
Target:  5'- aGC-CGGGCCaGC-GGUCGCG-CGUGCu -3'
miRNA:   3'- aUGcGUUCGG-CGuUCGGCGCuGCACG- -5'
26612 5' -57.3 NC_005357.1 + 26360 0.67 0.469505
Target:  5'- cUACGgc-GCCGCGcGCgGCGgccACGUGCg -3'
miRNA:   3'- -AUGCguuCGGCGUuCGgCGC---UGCACG- -5'
26612 5' -57.3 NC_005357.1 + 38021 0.67 0.468485
Target:  5'- cUACGacuGCCGCAcgcucaaGGCCcggcGCGACG-GCg -3'
miRNA:   3'- -AUGCguuCGGCGU-------UCGG----CGCUGCaCG- -5'
26612 5' -57.3 NC_005357.1 + 16519 0.67 0.469505
Target:  5'- -cCGCAAGCUGCAAGUCGaaACccGCc -3'
miRNA:   3'- auGCGUUCGGCGUUCGGCgcUGcaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.