miRNA display CGI


Results 41 - 60 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26612 5' -57.3 NC_005357.1 + 8392 0.67 0.459354
Target:  5'- cGCGCuGGCUGCGuagccagucGGCCaGgGcCGUGCg -3'
miRNA:   3'- aUGCGuUCGGCGU---------UCGG-CgCuGCACG- -5'
26612 5' -57.3 NC_005357.1 + 26827 0.67 0.459354
Target:  5'- uUugGCAGGCUGCGccGCCcCGAUGgagcggGCg -3'
miRNA:   3'- -AugCGUUCGGCGUu-CGGcGCUGCa-----CG- -5'
26612 5' -57.3 NC_005357.1 + 19495 0.67 0.459354
Target:  5'- gUGgGCAGGCCGCugcgaaCCGUGGucuUGUGCu -3'
miRNA:   3'- -AUgCGUUCGGCGuuc---GGCGCU---GCACG- -5'
26612 5' -57.3 NC_005357.1 + 34218 0.67 0.44932
Target:  5'- cGCGCAcgaacuGGCCGCcauGUCGCuGACGaacggGCa -3'
miRNA:   3'- aUGCGU------UCGGCGuu-CGGCG-CUGCa----CG- -5'
26612 5' -57.3 NC_005357.1 + 24555 0.67 0.443359
Target:  5'- cGCGCAgcgcggcgauggcgaGGCCGgccacgguCGGGCCGUccGGCGUGUc -3'
miRNA:   3'- aUGCGU---------------UCGGC--------GUUCGGCG--CUGCACG- -5'
26612 5' -57.3 NC_005357.1 + 19030 0.67 0.439409
Target:  5'- gUGCGguAGCCcugGUAgcGGCCGCcGGCG-GCg -3'
miRNA:   3'- -AUGCguUCGG---CGU--UCGGCG-CUGCaCG- -5'
26612 5' -57.3 NC_005357.1 + 8123 0.67 0.429624
Target:  5'- cGCGC-GGCCgGCGuuGGuuGUGgGCGUGCg -3'
miRNA:   3'- aUGCGuUCGG-CGU--UCggCGC-UGCACG- -5'
26612 5' -57.3 NC_005357.1 + 40057 0.67 0.429624
Target:  5'- cACGCGGGCgucugccacgUGCAGGCCgaauuGCGGCGcacGCg -3'
miRNA:   3'- aUGCGUUCG----------GCGUUCGG-----CGCUGCa--CG- -5'
26612 5' -57.3 NC_005357.1 + 41395 0.67 0.428652
Target:  5'- cAUGCu-GCCGCcGGCCGUGGCcuuccagGUGUu -3'
miRNA:   3'- aUGCGuuCGGCGuUCGGCGCUG-------CACG- -5'
26612 5' -57.3 NC_005357.1 + 5012 0.67 0.419968
Target:  5'- gGCGCAGuCCGCuuucagcGCCGCGAUGccccGCu -3'
miRNA:   3'- aUGCGUUcGGCGuu-----CGGCGCUGCa---CG- -5'
26612 5' -57.3 NC_005357.1 + 2350 0.67 0.419968
Target:  5'- cGCGCGugcGCCGCAauucGGCCuGC-ACGUGg -3'
miRNA:   3'- aUGCGUu--CGGCGU----UCGG-CGcUGCACg -5'
26612 5' -57.3 NC_005357.1 + 27837 0.67 0.419968
Target:  5'- cGCGguGG-CGCcGGCCGCGcCGcUGCu -3'
miRNA:   3'- aUGCguUCgGCGuUCGGCGCuGC-ACG- -5'
26612 5' -57.3 NC_005357.1 + 38388 0.67 0.419968
Target:  5'- --gGCcuGCCGCucGCCGCGGcCG-GCu -3'
miRNA:   3'- augCGuuCGGCGuuCGGCGCU-GCaCG- -5'
26612 5' -57.3 NC_005357.1 + 13598 0.68 0.410444
Target:  5'- --gGCAaguccGGCCGCAAcCCGaCGACG-GCg -3'
miRNA:   3'- augCGU-----UCGGCGUUcGGC-GCUGCaCG- -5'
26612 5' -57.3 NC_005357.1 + 31717 0.68 0.410444
Target:  5'- gACGCAuucaagcaaucGGCCG-AGGCCGUGcGCGcUGCc -3'
miRNA:   3'- aUGCGU-----------UCGGCgUUCGGCGC-UGC-ACG- -5'
26612 5' -57.3 NC_005357.1 + 5242 0.68 0.401056
Target:  5'- cGCGCAguucGGCCgGCAGGUCGgGGuCG-GCa -3'
miRNA:   3'- aUGCGU----UCGG-CGUUCGGCgCU-GCaCG- -5'
26612 5' -57.3 NC_005357.1 + 22797 0.68 0.391806
Target:  5'- gACGCuGGCCGau-GUCGCGGCccGCa -3'
miRNA:   3'- aUGCGuUCGGCguuCGGCGCUGcaCG- -5'
26612 5' -57.3 NC_005357.1 + 7158 0.68 0.391806
Target:  5'- gACGUugAAGCC-CAGGCC-CGACGcGCu -3'
miRNA:   3'- aUGCG--UUCGGcGUUCGGcGCUGCaCG- -5'
26612 5' -57.3 NC_005357.1 + 28554 0.68 0.391806
Target:  5'- -uUGC-GGCCGCcGGCCaucGCGGCGcGCa -3'
miRNA:   3'- auGCGuUCGGCGuUCGG---CGCUGCaCG- -5'
26612 5' -57.3 NC_005357.1 + 19629 0.68 0.391806
Target:  5'- cAUGCGGGCCGCGacaucGGCCaGCGuCGgguugGUg -3'
miRNA:   3'- aUGCGUUCGGCGU-----UCGG-CGCuGCa----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.