miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26613 3' -51.6 NC_005357.1 + 4207 0.66 0.839282
Target:  5'- -----gCCGCGAGCAcGucGCGGcuUGCg -3'
miRNA:   3'- aguuuaGGCGCUCGUaCu-CGCCu-ACG- -5'
26613 3' -51.6 NC_005357.1 + 13935 0.66 0.839282
Target:  5'- cCGAGUUCgGCaauGCc-GAGCGGAUGCu -3'
miRNA:   3'- aGUUUAGG-CGcu-CGuaCUCGCCUACG- -5'
26613 3' -51.6 NC_005357.1 + 31189 0.67 0.799625
Target:  5'- cUCAucgCCacgcuaGUGGGCGUGGGCGGGaacguggcggucaUGCg -3'
miRNA:   3'- -AGUuuaGG------CGCUCGUACUCGCCU-------------ACG- -5'
26613 3' -51.6 NC_005357.1 + 4358 0.67 0.790458
Target:  5'- -gGAAUCgGCcggacGGCA--GGCGGAUGCg -3'
miRNA:   3'- agUUUAGgCGc----UCGUacUCGCCUACG- -5'
26613 3' -51.6 NC_005357.1 + 16158 0.67 0.788401
Target:  5'- --cGAUgCGCGAGCcgaccaggccGGCGGGUGCc -3'
miRNA:   3'- aguUUAgGCGCUCGuac-------UCGCCUACG- -5'
26613 3' -51.6 NC_005357.1 + 33345 0.67 0.769576
Target:  5'- aCGGccUCGCG-GCcaGUGAGgGGAUGCa -3'
miRNA:   3'- aGUUuaGGCGCuCG--UACUCgCCUACG- -5'
26613 3' -51.6 NC_005357.1 + 12258 0.67 0.758895
Target:  5'- aCGGAUCgGCG-GUAguguccUGGGCGGGuUGCu -3'
miRNA:   3'- aGUUUAGgCGCuCGU------ACUCGCCU-ACG- -5'
26613 3' -51.6 NC_005357.1 + 9727 0.67 0.758895
Target:  5'- cUCGAAgCCGCGGGCGaacUGcucguGGUGGgcGCg -3'
miRNA:   3'- -AGUUUaGGCGCUCGU---AC-----UCGCCuaCG- -5'
26613 3' -51.6 NC_005357.1 + 35305 0.68 0.748071
Target:  5'- aCGAcUUCGCGGaCGUGAGCGGGg-- -3'
miRNA:   3'- aGUUuAGGCGCUcGUACUCGCCUacg -5'
26613 3' -51.6 NC_005357.1 + 40937 0.68 0.748071
Target:  5'- aUCAAGUaCGUGAGCcgGuGGCGGAa-- -3'
miRNA:   3'- -AGUUUAgGCGCUCGuaC-UCGCCUacg -5'
26613 3' -51.6 NC_005357.1 + 28721 0.68 0.714878
Target:  5'- gUCGGcgCaCGCGAGgAUGAGCGccuugGCa -3'
miRNA:   3'- -AGUUuaG-GCGCUCgUACUCGCcua--CG- -5'
26613 3' -51.6 NC_005357.1 + 24310 0.69 0.669425
Target:  5'- -gAGGUCgGCGAGCAgccGCGGGUcagGCg -3'
miRNA:   3'- agUUUAGgCGCUCGUacuCGCCUA---CG- -5'
26613 3' -51.6 NC_005357.1 + 31443 0.69 0.657934
Target:  5'- --cGAUCUGCG-GCGUGgucaucggaaAGUGGGUGCc -3'
miRNA:   3'- aguUUAGGCGCuCGUAC----------UCGCCUACG- -5'
26613 3' -51.6 NC_005357.1 + 25100 0.7 0.611825
Target:  5'- cCGGcgCCGUGGGauacAGCGGGUGCu -3'
miRNA:   3'- aGUUuaGGCGCUCguacUCGCCUACG- -5'
26613 3' -51.6 NC_005357.1 + 38702 1.14 0.000743
Target:  5'- aUCAAAUCCGCGAGCAUGAGCGGAUGCg -3'
miRNA:   3'- -AGUUUAGGCGCUCGUACUCGCCUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.