miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26613 5' -58.6 NC_005357.1 + 41742 0.66 0.479744
Target:  5'- uGGGCGGCccggccgGCGcCGCCGUaggcggccuGGUGGc--- -3'
miRNA:   3'- -CCCGUCG-------CGCaGCGGCA---------CCACCuaag -5'
26613 5' -58.6 NC_005357.1 + 28858 0.66 0.460712
Target:  5'- uGGCgAGCGCGcguucaacaUCGCCGUGGgcaccGAgUCa -3'
miRNA:   3'- cCCG-UCGCGC---------AGCGGCACCac---CUaAG- -5'
26613 5' -58.6 NC_005357.1 + 27621 0.66 0.460712
Target:  5'- aGGCAGCGC--CGCCGaGGUGcaGGUUUc -3'
miRNA:   3'- cCCGUCGCGcaGCGGCaCCAC--CUAAG- -5'
26613 5' -58.6 NC_005357.1 + 4105 0.66 0.459721
Target:  5'- uGGGCGGCGCugaauucGUCGCgGUcGUcGGcUUCg -3'
miRNA:   3'- -CCCGUCGCG-------CAGCGgCAcCA-CCuAAG- -5'
26613 5' -58.6 NC_005357.1 + 41631 0.66 0.441119
Target:  5'- gGGcGCGGCGCGUCGCCGg--------- -3'
miRNA:   3'- -CC-CGUCGCGCAGCGGCaccaccuaag -5'
26613 5' -58.6 NC_005357.1 + 4539 0.67 0.403402
Target:  5'- uGGGCGGuCGUGcCGCCGcGGaacUGGAc-- -3'
miRNA:   3'- -CCCGUC-GCGCaGCGGCaCC---ACCUaag -5'
26613 5' -58.6 NC_005357.1 + 31775 0.67 0.385324
Target:  5'- cGGCGGCGCGUuucaCGCCGcaGGUGa---- -3'
miRNA:   3'- cCCGUCGCGCA----GCGGCa-CCACcuaag -5'
26613 5' -58.6 NC_005357.1 + 25090 0.7 0.281439
Target:  5'- -cGCAGCGCGcccggCGCCGUGGgauacagcGGGUg- -3'
miRNA:   3'- ccCGUCGCGCa----GCGGCACCa-------CCUAag -5'
26613 5' -58.6 NC_005357.1 + 13926 0.7 0.247836
Target:  5'- aGGGCGauGuCGCGcagCGCCGUGGacUGGAUg- -3'
miRNA:   3'- -CCCGU--C-GCGCa--GCGGCACC--ACCUAag -5'
26613 5' -58.6 NC_005357.1 + 5472 0.72 0.190616
Target:  5'- cGGGCGGCGagguGUUGCCGaUGGgGGGUa- -3'
miRNA:   3'- -CCCGUCGCg---CAGCGGC-ACCaCCUAag -5'
26613 5' -58.6 NC_005357.1 + 3821 0.75 0.13013
Target:  5'- uGGGCAgGCGC-UUGCCGUGGUGag-UCa -3'
miRNA:   3'- -CCCGU-CGCGcAGCGGCACCACcuaAG- -5'
26613 5' -58.6 NC_005357.1 + 38736 1.11 0.000225
Target:  5'- gGGGCAGCGCGUCGCCGUGGUGGAUUCg -3'
miRNA:   3'- -CCCGUCGCGCAGCGGCACCACCUAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.