miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26614 3' -55.5 NC_005357.1 + 28192 0.67 0.537522
Target:  5'- cGUGGacgacgcacuuaACCGCGCCAAGGA--AGCCGc -3'
miRNA:   3'- uCACCg-----------UGGUGUGGUUCUUcgUCGGU- -5'
26614 3' -55.5 NC_005357.1 + 32417 0.67 0.528699
Target:  5'- --cGcGCGCCACgucuGCCAAGAcgacGGCAGCg- -3'
miRNA:   3'- ucaC-CGUGGUG----UGGUUCU----UCGUCGgu -5'
26614 3' -55.5 NC_005357.1 + 24485 0.67 0.528699
Target:  5'- -uUGGC-CUGCGCCAGGAAGUcguaggGGCUg -3'
miRNA:   3'- ucACCGuGGUGUGGUUCUUCG------UCGGu -5'
26614 3' -55.5 NC_005357.1 + 10307 0.67 0.528699
Target:  5'- cGG-GGUGCCACuucgccaguuucGCCAGGccGUAGCCGu -3'
miRNA:   3'- -UCaCCGUGGUG------------UGGUUCuuCGUCGGU- -5'
26614 3' -55.5 NC_005357.1 + 39990 0.67 0.528699
Target:  5'- cGUGGCGCCGauCUucGAGGcCGGCCu -3'
miRNA:   3'- uCACCGUGGUguGGuuCUUC-GUCGGu -5'
26614 3' -55.5 NC_005357.1 + 29702 0.67 0.525404
Target:  5'- --cGGCACCcaGCACCAAcGGGCcgggcgacuugaacAGCCAg -3'
miRNA:   3'- ucaCCGUGG--UGUGGUUcUUCG--------------UCGGU- -5'
26614 3' -55.5 NC_005357.1 + 12666 0.67 0.506885
Target:  5'- ---cGCGCaCGCGCCuGGcAGCAGCCGa -3'
miRNA:   3'- ucacCGUG-GUGUGGuUCuUCGUCGGU- -5'
26614 3' -55.5 NC_005357.1 + 33121 0.67 0.506885
Target:  5'- cGUGcGcCGCCAgguCGCCGAGGAagucaaugcGCAGCCGg -3'
miRNA:   3'- uCAC-C-GUGGU---GUGGUUCUU---------CGUCGGU- -5'
26614 3' -55.5 NC_005357.1 + 27428 0.67 0.506885
Target:  5'- --gGcGCACCGCGCCc---GGCGGCCGc -3'
miRNA:   3'- ucaC-CGUGGUGUGGuucuUCGUCGGU- -5'
26614 3' -55.5 NC_005357.1 + 30827 0.67 0.506885
Target:  5'- -cUGGCACUGCugCcc--GGCGGCCAg -3'
miRNA:   3'- ucACCGUGGUGugGuucuUCGUCGGU- -5'
26614 3' -55.5 NC_005357.1 + 13043 0.67 0.496122
Target:  5'- -cUGGCcuACCGCGCCGAGuccgagggcugGGGCaaGGCCAc -3'
miRNA:   3'- ucACCG--UGGUGUGGUUC-----------UUCG--UCGGU- -5'
26614 3' -55.5 NC_005357.1 + 37657 0.67 0.496122
Target:  5'- --gGGCGCagugugggcgaACGCCGAGAAcaucGCGGCCGu -3'
miRNA:   3'- ucaCCGUGg----------UGUGGUUCUU----CGUCGGU- -5'
26614 3' -55.5 NC_005357.1 + 19843 0.67 0.495051
Target:  5'- cGUGcaagaucGCaACCGCGgCGAGAAGCGGCaCAa -3'
miRNA:   3'- uCAC-------CG-UGGUGUgGUUCUUCGUCG-GU- -5'
26614 3' -55.5 NC_005357.1 + 41446 0.67 0.485463
Target:  5'- --cGGCACCG-GCCA---GGCGGCCAa -3'
miRNA:   3'- ucaCCGUGGUgUGGUucuUCGUCGGU- -5'
26614 3' -55.5 NC_005357.1 + 38242 0.67 0.485463
Target:  5'- --cGGCcaacauGCC-CGCCAucGAGGCGGCCGg -3'
miRNA:   3'- ucaCCG------UGGuGUGGUu-CUUCGUCGGU- -5'
26614 3' -55.5 NC_005357.1 + 14243 0.68 0.474915
Target:  5'- --aGGCGCCGCACCugcuGGgcGUGGgCAa -3'
miRNA:   3'- ucaCCGUGGUGUGGu---UCuuCGUCgGU- -5'
26614 3' -55.5 NC_005357.1 + 37497 0.68 0.464483
Target:  5'- cGUGGCGCC-CGagggCAAGAAGCuGGUCGu -3'
miRNA:   3'- uCACCGUGGuGUg---GUUCUUCG-UCGGU- -5'
26614 3' -55.5 NC_005357.1 + 2222 0.68 0.454171
Target:  5'- gGGUaGCACCACGCgCAGcAGGCGGCg- -3'
miRNA:   3'- -UCAcCGUGGUGUG-GUUcUUCGUCGgu -5'
26614 3' -55.5 NC_005357.1 + 12839 0.68 0.443985
Target:  5'- -cUGGCAaaccgCGCGCCuGGgcGCGGCCGa -3'
miRNA:   3'- ucACCGUg----GUGUGGuUCuuCGUCGGU- -5'
26614 3' -55.5 NC_005357.1 + 20832 0.68 0.442973
Target:  5'- --cGGCACCAauccgcagaugacCGCCAccGAAGUGGCCGa -3'
miRNA:   3'- ucaCCGUGGU-------------GUGGUu-CUUCGUCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.