miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26615 3' -55.3 NC_005357.1 + 12550 0.66 0.611022
Target:  5'- gCCGGGG-GGGGUGGUGCUagacccguucgcaGGAAGcGGCa -3'
miRNA:   3'- -GGUCCUaCCUCGUCGUGA-------------CCUUC-CUG- -5'
26615 3' -55.3 NC_005357.1 + 40846 0.66 0.600882
Target:  5'- aCCAGGAaGGcGGCGGCcACUacAAGGAUa -3'
miRNA:   3'- -GGUCCUaCC-UCGUCG-UGAccUUCCUG- -5'
26615 3' -55.3 NC_005357.1 + 13566 0.67 0.567284
Target:  5'- gCgAGGAcgUGGcGCGGCGCUGGGAcaGCu -3'
miRNA:   3'- -GgUCCU--ACCuCGUCGUGACCUUccUG- -5'
26615 3' -55.3 NC_005357.1 + 4340 0.72 0.283555
Target:  5'- gCGGGcUGGGGUAGCAgaGGAAucggccGGACg -3'
miRNA:   3'- gGUCCuACCUCGUCGUgaCCUU------CCUG- -5'
26615 3' -55.3 NC_005357.1 + 1488 0.73 0.255405
Target:  5'- gCCGGGGUaucGCAGUGCUGGucGGACa -3'
miRNA:   3'- -GGUCCUAccuCGUCGUGACCuuCCUG- -5'
26615 3' -55.3 NC_005357.1 + 39393 1.13 0.000354
Target:  5'- aCCAGGAUGGAGCAGCACUGGAAGGACg -3'
miRNA:   3'- -GGUCCUACCUCGUCGUGACCUUCCUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.