Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26615 | 5' | -63.5 | NC_005357.1 | + | 21715 | 0.66 | 0.272704 |
Target: 5'- -cGGCCUGauggggugcCCGUGCCUcgUCGUCCagCCCa -3' miRNA: 3'- uaCUGGGC---------GGCGCGGA--AGCAGG--GGGc -5' |
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26615 | 5' | -63.5 | NC_005357.1 | + | 40446 | 0.66 | 0.272704 |
Target: 5'- -cGACCuCG-CGCGCCUacagCGugccuUCCCCCa -3' miRNA: 3'- uaCUGG-GCgGCGCGGAa---GC-----AGGGGGc -5' |
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26615 | 5' | -63.5 | NC_005357.1 | + | 20617 | 0.66 | 0.265426 |
Target: 5'- --aACCCGCCGCugcaacuGCCggUGUCCgCCa -3' miRNA: 3'- uacUGGGCGGCG-------CGGaaGCAGGgGGc -5' |
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26615 | 5' | -63.5 | NC_005357.1 | + | 32113 | 0.66 | 0.246993 |
Target: 5'- --cGCCCugGCCGCuGCCgaccUCGacgCCCCCGa -3' miRNA: 3'- uacUGGG--CGGCG-CGGa---AGCa--GGGGGC- -5' |
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26615 | 5' | -63.5 | NC_005357.1 | + | 33854 | 0.67 | 0.240887 |
Target: 5'- cGUGACCgucgUGUCGCGCCUgUCGcugCCCgCCa -3' miRNA: 3'- -UACUGG----GCGGCGCGGA-AGCa--GGG-GGc -5' |
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26615 | 5' | -63.5 | NC_005357.1 | + | 1760 | 0.67 | 0.223323 |
Target: 5'- cAUGGCCgGCCuGCGCCUggcgCGUCgggCCGa -3' miRNA: 3'- -UACUGGgCGG-CGCGGAa---GCAGgg-GGC- -5' |
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26615 | 5' | -63.5 | NC_005357.1 | + | 13367 | 0.68 | 0.191455 |
Target: 5'- gAUGACCCGCUGaugGCCUaCGagCCgCCGg -3' miRNA: 3'- -UACUGGGCGGCg--CGGAaGCa-GGgGGC- -5' |
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26615 | 5' | -63.5 | NC_005357.1 | + | 11835 | 0.69 | 0.167134 |
Target: 5'- -aGACCgGCCGCGCCgcggUUGgccugggcgaaCCCCGc -3' miRNA: 3'- uaCUGGgCGGCGCGGa---AGCag---------GGGGC- -5' |
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26615 | 5' | -63.5 | NC_005357.1 | + | 25138 | 0.69 | 0.155217 |
Target: 5'- gAUGcgcGCCCGCgGCGCCggcuUCGUggacggcaauaUCCCCGg -3' miRNA: 3'- -UAC---UGGGCGgCGCGGa---AGCA-----------GGGGGC- -5' |
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26615 | 5' | -63.5 | NC_005357.1 | + | 13753 | 0.7 | 0.132238 |
Target: 5'- cGUGGCgCGCCGCGCUggCGaggCCgCCGg -3' miRNA: 3'- -UACUGgGCGGCGCGGaaGCa--GGgGGC- -5' |
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26615 | 5' | -63.5 | NC_005357.1 | + | 33106 | 0.72 | 0.090321 |
Target: 5'- --cGCCCGCCGCGCCgaCGUgCgCCGc -3' miRNA: 3'- uacUGGGCGGCGCGGaaGCAgGgGGC- -5' |
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26615 | 5' | -63.5 | NC_005357.1 | + | 39427 | 1.05 | 0.000226 |
Target: 5'- uAUGACCCGCCGCGCCUUCGUCCCCCGu -3' miRNA: 3'- -UACUGGGCGGCGCGGAAGCAGGGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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