Results 81 - 97 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26616 | 3' | -62.4 | NC_005357.1 | + | 34042 | 0.71 | 0.129609 |
Target: 5'- cACGuGGGCGGCGauucucgaagauucgAGCGCG-GCG-GCGCa -3' miRNA: 3'- -UGU-CCCGCCGU---------------UCGCGCgCGUgCGCG- -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 34257 | 0.69 | 0.186695 |
Target: 5'- ---cGGCaGCAucCGgGCGCACGCGCa -3' miRNA: 3'- ugucCCGcCGUucGCgCGCGUGCGCG- -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 34640 | 0.7 | 0.139106 |
Target: 5'- uGCuGGGCGGCGaaggguGGaCGCcgGCGCAgauCGCGCc -3' miRNA: 3'- -UGuCCCGCCGU------UC-GCG--CGCGU---GCGCG- -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 34700 | 0.69 | 0.177087 |
Target: 5'- cGCAGGaaUGGCAAGCG-GUGCAgGCGg -3' miRNA: 3'- -UGUCCc-GCCGUUCGCgCGCGUgCGCg -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 35187 | 0.66 | 0.309945 |
Target: 5'- --uGGGCGGCcgacaucgccGAGgGUGaGCGCgGCGCa -3' miRNA: 3'- uguCCCGCCG----------UUCgCGCgCGUG-CGCG- -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 35314 | 0.68 | 0.212744 |
Target: 5'- cGCuGGGCaucacGCAGuccaucguGCGCGUGgGCGCGCc -3' miRNA: 3'- -UGuCCCGc----CGUU--------CGCGCGCgUGCGCG- -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 35921 | 0.71 | 0.13538 |
Target: 5'- cGCAGGacacaacuaCGGCAAGCGCGUGaauGCGgGCc -3' miRNA: 3'- -UGUCCc--------GCCGUUCGCGCGCg--UGCgCG- -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 36626 | 0.7 | 0.150855 |
Target: 5'- cCAGGGCGGCuucuaccccaAGGUcauCGaGCACGCGCu -3' miRNA: 3'- uGUCCCGCCG----------UUCGc--GCgCGUGCGCG- -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 36854 | 0.7 | 0.154552 |
Target: 5'- cACGGuGGCGGCcAGCGUugGCGCcgucgauaccgugGCGgGCg -3' miRNA: 3'- -UGUC-CCGCCGuUCGCG--CGCG-------------UGCgCG- -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 36912 | 0.66 | 0.295241 |
Target: 5'- --uGGGCGGCcGGCGUGCcUACGacuuugGCa -3' miRNA: 3'- uguCCCGCCGuUCGCGCGcGUGCg-----CG- -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 37079 | 0.67 | 0.260871 |
Target: 5'- uGCA-GGCGGCcacgcAGCGCgaugccaugcuGCGCcACGUGCu -3' miRNA: 3'- -UGUcCCGCCGu----UCGCG-----------CGCG-UGCGCG- -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 38576 | 0.8 | 0.025556 |
Target: 5'- aGCuGGGCGGCGAG-GUGCGCAaagUGCGCu -3' miRNA: 3'- -UGuCCCGCCGUUCgCGCGCGU---GCGCG- -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 39676 | 0.69 | 0.16792 |
Target: 5'- gGCAGuGGuCGGCAcgcccgagcAGCGcCGgGC-CGCGCu -3' miRNA: 3'- -UGUC-CC-GCCGU---------UCGC-GCgCGuGCGCG- -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 39846 | 1.1 | 0.000115 |
Target: 5'- aACAGGGCGGCAAGCGCGCGCACGCGCu -3' miRNA: 3'- -UGUCCCGCCGUUCGCGCGCGUGCGCG- -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 40057 | 0.73 | 0.09466 |
Target: 5'- cACGcGGGCGucugccacguGCAGGCcgaauuGCgGCGCACGCGCg -3' miRNA: 3'- -UGU-CCCGC----------CGUUCG------CG-CGCGUGCGCG- -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 41027 | 0.67 | 0.241243 |
Target: 5'- -gGGGGCGGCcauGAGUGaaaccguUGUGCGCGUGg -3' miRNA: 3'- ugUCCCGCCG---UUCGC-------GCGCGUGCGCg -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 42246 | 0.67 | 0.247436 |
Target: 5'- gGCGGGGaugacgcCGGCAuucuGCGCGCgGCAgcuUGgGCa -3' miRNA: 3'- -UGUCCC-------GCCGUu---CGCGCG-CGU---GCgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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