Results 61 - 80 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26616 | 3' | -62.4 | NC_005357.1 | + | 35921 | 0.71 | 0.13538 |
Target: 5'- cGCAGGacacaacuaCGGCAAGCGCGUGaauGCGgGCc -3' miRNA: 3'- -UGUCCc--------GCCGUUCGCGCGCg--UGCgCG- -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 34042 | 0.71 | 0.129609 |
Target: 5'- cACGuGGGCGGCGauucucgaagauucgAGCGCG-GCG-GCGCa -3' miRNA: 3'- -UGU-CCCGCCGU---------------UCGCGCgCGUgCGCG- -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 26046 | 0.74 | 0.073576 |
Target: 5'- aGCccGcGCGGCGGGCGCGCucCAUGCGCu -3' miRNA: 3'- -UGucC-CGCCGUUCGCGCGc-GUGCGCG- -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 7058 | 0.75 | 0.06353 |
Target: 5'- cCGGGGCGGCcagguacuucaugacGccgcggccuacccacGGCGCGCcCACGCGCa -3' miRNA: 3'- uGUCCCGCCG---------------U---------------UCGCGCGcGUGCGCG- -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 25767 | 0.76 | 0.052375 |
Target: 5'- uGCuGGGCGGCGgcaacgauGGCcgcgauGCGCGCGgCGCGCu -3' miRNA: 3'- -UGuCCCGCCGU--------UCG------CGCGCGU-GCGCG- -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 26257 | 0.68 | 0.207295 |
Target: 5'- gGCAcGGGCacccgccggccuGGUcGGCuCGCGCAuCGCGCg -3' miRNA: 3'- -UGU-CCCG------------CCGuUCGcGCGCGU-GCGCG- -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 9206 | 0.68 | 0.212744 |
Target: 5'- uGCucGGCGGCGcGGCGCaCGUucugcgGCGCGCc -3' miRNA: 3'- -UGucCCGCCGU-UCGCGcGCG------UGCGCG- -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 2235 | 0.68 | 0.218315 |
Target: 5'- cGCAGcaGGCGGC--GCGUG-GC-CGCGCa -3' miRNA: 3'- -UGUC--CCGCCGuuCGCGCgCGuGCGCG- -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 33751 | 0.66 | 0.309945 |
Target: 5'- cACAccuGGGCGGCGcagcAGC-CGCuGCACacagcgaguacgGCGCg -3' miRNA: 3'- -UGU---CCCGCCGU----UCGcGCG-CGUG------------CGCG- -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 31020 | 0.66 | 0.302525 |
Target: 5'- --cGGGCuugccggccgaGGCAAucGCGCGgGCcaACGUGCg -3' miRNA: 3'- uguCCCG-----------CCGUU--CGCGCgCG--UGCGCG- -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 31104 | 0.66 | 0.302525 |
Target: 5'- uGCAGGcCGGCGAGUG-GUGCGagauaGCGg -3' miRNA: 3'- -UGUCCcGCCGUUCGCgCGCGUg----CGCg -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 14412 | 0.66 | 0.295241 |
Target: 5'- aGCuGGGCGucgcCAGGCGCGCcugcgGCAcCGUGUu -3' miRNA: 3'- -UGuCCCGCc---GUUCGCGCG-----CGU-GCGCG- -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 8574 | 0.66 | 0.295241 |
Target: 5'- --uGGGCGucGUAGGcCGCGCGUGCG-GCc -3' miRNA: 3'- uguCCCGC--CGUUC-GCGCGCGUGCgCG- -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 29567 | 0.66 | 0.295241 |
Target: 5'- uCGGGGUaucgcgucaGGUcGGC-CGCGCccagGCGCGCg -3' miRNA: 3'- uGUCCCG---------CCGuUCGcGCGCG----UGCGCG- -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 19856 | 0.66 | 0.295241 |
Target: 5'- aGCAGcGUGGUGAGUucggGCGUGCcgaaggcgucGCGCGCc -3' miRNA: 3'- -UGUCcCGCCGUUCG----CGCGCG----------UGCGCG- -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 28756 | 0.66 | 0.288095 |
Target: 5'- cCAGcGCGGUGcgcuucucGGCGCGCacgGCGuCGCGCu -3' miRNA: 3'- uGUCcCGCCGU--------UCGCGCG---CGU-GCGCG- -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 16935 | 0.67 | 0.235779 |
Target: 5'- gUAGGGCacGGCGccguccAGCaGCGUGC-CGCGUu -3' miRNA: 3'- uGUCCCG--CCGU------UCG-CGCGCGuGCGCG- -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 25070 | 0.67 | 0.229831 |
Target: 5'- --cGGGCaGCAucgccacccAGCGCaGCGCGCccgGCGCc -3' miRNA: 3'- uguCCCGcCGU---------UCGCG-CGCGUG---CGCG- -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 8143 | 0.68 | 0.22401 |
Target: 5'- --uGGGCGuGCGGGUgucgGCGCugcgucccuGCGCGUGCg -3' miRNA: 3'- uguCCCGC-CGUUCG----CGCG---------CGUGCGCG- -5' |
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26616 | 3' | -62.4 | NC_005357.1 | + | 9977 | 0.68 | 0.223435 |
Target: 5'- aGCAGGaaaCGGUGAGCGUggcggggucgaaaGUGC-CGCGCg -3' miRNA: 3'- -UGUCCc--GCCGUUCGCG-------------CGCGuGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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