miRNA display CGI


Results 81 - 97 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26616 3' -62.4 NC_005357.1 + 8574 0.66 0.295241
Target:  5'- --uGGGCGucGUAGGcCGCGCGUGCG-GCc -3'
miRNA:   3'- uguCCCGC--CGUUC-GCGCGCGUGCgCG- -5'
26616 3' -62.4 NC_005357.1 + 14412 0.66 0.295241
Target:  5'- aGCuGGGCGucgcCAGGCGCGCcugcgGCAcCGUGUu -3'
miRNA:   3'- -UGuCCCGCc---GUUCGCGCG-----CGU-GCGCG- -5'
26616 3' -62.4 NC_005357.1 + 31104 0.66 0.302525
Target:  5'- uGCAGGcCGGCGAGUG-GUGCGagauaGCGg -3'
miRNA:   3'- -UGUCCcGCCGUUCGCgCGCGUg----CGCg -5'
26616 3' -62.4 NC_005357.1 + 31020 0.66 0.302525
Target:  5'- --cGGGCuugccggccgaGGCAAucGCGCGgGCcaACGUGCg -3'
miRNA:   3'- uguCCCG-----------CCGUU--CGCGCgCG--UGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 9316 0.66 0.267474
Target:  5'- gACcuGGCGGCGcacgucGGCGCG-GCGgGCGg -3'
miRNA:   3'- -UGucCCGCCGU------UCGCGCgCGUgCGCg -5'
26616 3' -62.4 NC_005357.1 + 37079 0.67 0.260871
Target:  5'- uGCA-GGCGGCcacgcAGCGCgaugccaugcuGCGCcACGUGCu -3'
miRNA:   3'- -UGUcCCGCCGu----UCGCG-----------CGCG-UGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 27437 0.67 0.254401
Target:  5'- cGCccGGCGGCcgcaggcccuGGCGCugguaugccaGCGCGcCGCGCa -3'
miRNA:   3'- -UGucCCGCCGu---------UCGCG----------CGCGU-GCGCG- -5'
26616 3' -62.4 NC_005357.1 + 9206 0.68 0.212744
Target:  5'- uGCucGGCGGCGcGGCGCaCGUucugcgGCGCGCc -3'
miRNA:   3'- -UGucCCGCCGU-UCGCGcGCG------UGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 2235 0.68 0.218315
Target:  5'- cGCAGcaGGCGGC--GCGUG-GC-CGCGCa -3'
miRNA:   3'- -UGUC--CCGCCGuuCGCGCgCGuGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 9977 0.68 0.223435
Target:  5'- aGCAGGaaaCGGUGAGCGUggcggggucgaaaGUGC-CGCGCg -3'
miRNA:   3'- -UGUCCc--GCCGUUCGCG-------------CGCGuGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 8143 0.68 0.22401
Target:  5'- --uGGGCGuGCGGGUgucgGCGCugcgucccuGCGCGUGCg -3'
miRNA:   3'- uguCCCGC-CGUUCG----CGCG---------CGUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 25070 0.67 0.229831
Target:  5'- --cGGGCaGCAucgccacccAGCGCaGCGCGCccgGCGCc -3'
miRNA:   3'- uguCCCGcCGU---------UCGCG-CGCGUG---CGCG- -5'
26616 3' -62.4 NC_005357.1 + 16935 0.67 0.235779
Target:  5'- gUAGGGCacGGCGccguccAGCaGCGUGC-CGCGUu -3'
miRNA:   3'- uGUCCCG--CCGU------UCG-CGCGCGuGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 41027 0.67 0.241243
Target:  5'- -gGGGGCGGCcauGAGUGaaaccguUGUGCGCGUGg -3'
miRNA:   3'- ugUCCCGCCG---UUCGC-------GCGCGUGCGCg -5'
26616 3' -62.4 NC_005357.1 + 42246 0.67 0.247436
Target:  5'- gGCGGGGaugacgcCGGCAuucuGCGCGCgGCAgcuUGgGCa -3'
miRNA:   3'- -UGUCCC-------GCCGUu---CGCGCG-CGU---GCgCG- -5'
26616 3' -62.4 NC_005357.1 + 4512 0.67 0.248063
Target:  5'- --cGGGCGGCGcccgugaacguGGCGUgcuggGCGguCGUGCc -3'
miRNA:   3'- uguCCCGCCGU-----------UCGCG-----CGCguGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 33751 0.66 0.309945
Target:  5'- cACAccuGGGCGGCGcagcAGC-CGCuGCACacagcgaguacgGCGCg -3'
miRNA:   3'- -UGU---CCCGCCGU----UCGcGCG-CGUG------------CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.