miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26616 3' -62.4 NC_005357.1 + 39676 0.69 0.16792
Target:  5'- gGCAGuGGuCGGCAcgcccgagcAGCGcCGgGC-CGCGCu -3'
miRNA:   3'- -UGUC-CC-GCCGU---------UCGC-GCgCGuGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 17710 0.69 0.172449
Target:  5'- cCGGGaaaugcccaucGCGGCAAGCuGCGCGCAUuuggugGCGa -3'
miRNA:   3'- uGUCC-----------CGCCGUUCG-CGCGCGUG------CGCg -5'
26616 3' -62.4 NC_005357.1 + 17765 0.69 0.177087
Target:  5'- uGCAGuucgaGCaGCGAGuCGCGCGCgaacggauagaaGCGCGCg -3'
miRNA:   3'- -UGUCc----CGcCGUUC-GCGCGCG------------UGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 7414 0.69 0.183765
Target:  5'- gACAGGGUauaGaGC-AGCGgGCGCccggacacuuccucgACGCGCg -3'
miRNA:   3'- -UGUCCCG---C-CGuUCGCgCGCG---------------UGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 10858 0.69 0.186695
Target:  5'- aGCAGGcccugcGUGGCuucggucGGCGCGaUGCGCGCGg -3'
miRNA:   3'- -UGUCC------CGCCGu------UCGCGC-GCGUGCGCg -5'
26616 3' -62.4 NC_005357.1 + 24075 0.7 0.139106
Target:  5'- cACAGuaGCGGCGAcCGCGCgggGCACGgGCa -3'
miRNA:   3'- -UGUCc-CGCCGUUcGCGCG---CGUGCgCG- -5'
26616 3' -62.4 NC_005357.1 + 5094 0.67 0.260871
Target:  5'- aACA-GGCGGCcGGCccagcguccgGUGCgGCugGCGCc -3'
miRNA:   3'- -UGUcCCGCCGuUCG----------CGCG-CGugCGCG- -5'
26616 3' -62.4 NC_005357.1 + 15252 0.67 0.254401
Target:  5'- gGCaAGGGUcgucgaGGCAucCGCGUGCGgCGCGUg -3'
miRNA:   3'- -UG-UCCCG------CCGUucGCGCGCGU-GCGCG- -5'
26616 3' -62.4 NC_005357.1 + 7830 0.67 0.254401
Target:  5'- -gAGGcGCGGCugcaCGaugaccagGCGCACGCGCu -3'
miRNA:   3'- ugUCC-CGCCGuuc-GCg-------CGCGUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 1364 0.67 0.241856
Target:  5'- -aAGGGaUGGUgacauaGGGCGcCGCGgcCACGCGCa -3'
miRNA:   3'- ugUCCC-GCCG------UUCGC-GCGC--GUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 1749 0.67 0.235779
Target:  5'- cACcGGGCGGUcauGGCcggccuGCGC-CugGCGCg -3'
miRNA:   3'- -UGuCCCGCCGu--UCG------CGCGcGugCGCG- -5'
26616 3' -62.4 NC_005357.1 + 8211 0.67 0.235779
Target:  5'- gACAuGGCGGCcAGUucGUGCGCGgcCGUGCc -3'
miRNA:   3'- -UGUcCCGCCGuUCG--CGCGCGU--GCGCG- -5'
26616 3' -62.4 NC_005357.1 + 4364 0.67 0.235779
Target:  5'- gGCcGGaCGGCAGGCGgaUGCGCAgccaggcgccguCGCGCc -3'
miRNA:   3'- -UGuCCcGCCGUUCGC--GCGCGU------------GCGCG- -5'
26616 3' -62.4 NC_005357.1 + 813 0.68 0.217752
Target:  5'- aGCA-GGUGGCugggcuuGAGCGCGCGCAgagacaGCGa -3'
miRNA:   3'- -UGUcCCGCCG-------UUCGCGCGCGUg-----CGCg -5'
26616 3' -62.4 NC_005357.1 + 35314 0.68 0.212744
Target:  5'- cGCuGGGCaucacGCAGuccaucguGCGCGUGgGCGCGCc -3'
miRNA:   3'- -UGuCCCGc----CGUU--------CGCGCGCgUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 28004 0.68 0.207295
Target:  5'- aACAcGGuGCcGCAGGCGCGC-CugGCGa -3'
miRNA:   3'- -UGU-CC-CGcCGUUCGCGCGcGugCGCg -5'
26616 3' -62.4 NC_005357.1 + 16613 0.68 0.195221
Target:  5'- aACGGcGGCccgguGCAgaucaacgauaccgAGCGCGC-CGCGCGCa -3'
miRNA:   3'- -UGUC-CCGc----CGU--------------UCGCGCGcGUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 27309 0.69 0.19167
Target:  5'- cAUGGGGUcgggccugguaGGCAgcuauuacGGCGCGCGguCGCaGCa -3'
miRNA:   3'- -UGUCCCG-----------CCGU--------UCGCGCGCguGCG-CG- -5'
26616 3' -62.4 NC_005357.1 + 28098 0.67 0.260871
Target:  5'- aGCAGGccCGGCAguucagccaaGGCGCGCGCcaguucagcaACGaCGUg -3'
miRNA:   3'- -UGUCCc-GCCGU----------UCGCGCGCG----------UGC-GCG- -5'
26616 3' -62.4 NC_005357.1 + 10563 0.66 0.273533
Target:  5'- -gGGGGUcuugcacGGCGAGgGCGUGC-CGCa- -3'
miRNA:   3'- ugUCCCG-------CCGUUCgCGCGCGuGCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.