Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26617 | 5' | -54.7 | NC_005357.1 | + | 23761 | 0.7 | 0.388698 |
Target: 5'- -uGUAACAGGcCGGGGGCGGGCgaccGCc -3' miRNA: 3'- guCGUUGUCUaGCUCCUGUCCGa---CGc -5' |
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26617 | 5' | -54.7 | NC_005357.1 | + | 24082 | 0.67 | 0.609728 |
Target: 5'- gCGGCGACcGcgCGGGGcACGGGCaccccgcuacaUGCGc -3' miRNA: 3'- -GUCGUUGuCuaGCUCC-UGUCCG-----------ACGC- -5' |
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26617 | 5' | -54.7 | NC_005357.1 | + | 27305 | 0.67 | 0.598408 |
Target: 5'- cCAGCAugGGGUCGGGccuGGUAGGCaGCu -3' miRNA: 3'- -GUCGUugUCUAGCUC---CUGUCCGaCGc -5' |
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26617 | 5' | -54.7 | NC_005357.1 | + | 27647 | 0.69 | 0.488333 |
Target: 5'- cCAGCGacaucgugaaGCAGAUCGAcaccGACAcGCUGCGc -3' miRNA: 3'- -GUCGU----------UGUCUAGCUc---CUGUcCGACGC- -5' |
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26617 | 5' | -54.7 | NC_005357.1 | + | 28056 | 0.68 | 0.520532 |
Target: 5'- uCGGCGACGGucugcUCGAacagcGGGCAGGUggccGCGg -3' miRNA: 3'- -GUCGUUGUCu----AGCU-----CCUGUCCGa---CGC- -5' |
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26617 | 5' | -54.7 | NC_005357.1 | + | 32306 | 0.66 | 0.655109 |
Target: 5'- aGGCGugGccGGUaCGAGGACAGGCa--- -3' miRNA: 3'- gUCGUugU--CUA-GCUCCUGUCCGacgc -5' |
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26617 | 5' | -54.7 | NC_005357.1 | + | 33877 | 0.68 | 0.531452 |
Target: 5'- cCAGgAugAGGUCGAGcGCGGcCUGCGa -3' miRNA: 3'- -GUCgUugUCUAGCUCcUGUCcGACGC- -5' |
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26617 | 5' | -54.7 | NC_005357.1 | + | 34190 | 0.69 | 0.488333 |
Target: 5'- cCAGCGACuucgccGA-CGAGGGCAcGGCcGCGc -3' miRNA: 3'- -GUCGUUGu-----CUaGCUCCUGU-CCGaCGC- -5' |
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26617 | 5' | -54.7 | NC_005357.1 | + | 35215 | 0.66 | 0.666425 |
Target: 5'- gCGGC-GCAGAUgcugcCGuGGACAucgcgcugucccGGCUGCGu -3' miRNA: 3'- -GUCGuUGUCUA-----GCuCCUGU------------CCGACGC- -5' |
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26617 | 5' | -54.7 | NC_005357.1 | + | 40086 | 1.08 | 0.00088 |
Target: 5'- cCAGCAACAGAUCGAGGACAGGCUGCGc -3' miRNA: 3'- -GUCGUUGUCUAGCUCCUGUCCGACGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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