miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26618 5' -59.5 NC_005357.1 + 5541 0.66 0.420252
Target:  5'- aGGUUCCGCccagg-UCGCCCGCCaCGGu -3'
miRNA:   3'- -UUAGGGCGacgacaAGCGGGUGG-GCC- -5'
26618 5' -59.5 NC_005357.1 + 20220 0.66 0.416497
Target:  5'- --gCCCGCggccgGCUGUUgGCCUugggugccuugcuCCUGGg -3'
miRNA:   3'- uuaGGGCGa----CGACAAgCGGGu------------GGGCC- -5'
26618 5' -59.5 NC_005357.1 + 14863 0.66 0.409974
Target:  5'- ---gCCGCacGCUGggCGCCUuuaaguuGCCCGGc -3'
miRNA:   3'- uuagGGCGa-CGACaaGCGGG-------UGGGCC- -5'
26618 5' -59.5 NC_005357.1 + 33049 0.66 0.392596
Target:  5'- -uUCCCGCgUGCUGUcgugCGCUuCAUCgGGu -3'
miRNA:   3'- uuAGGGCG-ACGACAa---GCGG-GUGGgCC- -5'
26618 5' -59.5 NC_005357.1 + 38383 0.67 0.36615
Target:  5'- aAGUUCCGCccgGCUGcgcUCGaCCCGCgCGGc -3'
miRNA:   3'- -UUAGGGCGa--CGACa--AGC-GGGUGgGCC- -5'
26618 5' -59.5 NC_005357.1 + 14764 0.67 0.349214
Target:  5'- --aCCaCGgUGgaGguggCGCCCACCUGGg -3'
miRNA:   3'- uuaGG-GCgACgaCaa--GCGGGUGGGCC- -5'
26618 5' -59.5 NC_005357.1 + 12731 0.67 0.340958
Target:  5'- --gCCCGUuggUGCUGggUGCCgCGCCCa- -3'
miRNA:   3'- uuaGGGCG---ACGACaaGCGG-GUGGGcc -5'
26618 5' -59.5 NC_005357.1 + 19247 0.67 0.340958
Target:  5'- --aCCUGCUGCUG-UCGCaCCAgCaGGg -3'
miRNA:   3'- uuaGGGCGACGACaAGCG-GGUgGgCC- -5'
26618 5' -59.5 NC_005357.1 + 18120 0.69 0.280041
Target:  5'- --aCCCGCgGCUGcUCGCCgACCUc- -3'
miRNA:   3'- uuaGGGCGaCGACaAGCGGgUGGGcc -5'
26618 5' -59.5 NC_005357.1 + 38877 0.69 0.273066
Target:  5'- --gCCCGCUGCUGcgcuaUUCGgCggCGCCUGGa -3'
miRNA:   3'- uuaGGGCGACGAC-----AAGCgG--GUGGGCC- -5'
26618 5' -59.5 NC_005357.1 + 24948 0.7 0.210825
Target:  5'- aAGUCUCGCcGCUGUUCGUgCAggcCCUGGc -3'
miRNA:   3'- -UUAGGGCGaCGACAAGCGgGU---GGGCC- -5'
26618 5' -59.5 NC_005357.1 + 40532 1.07 0.00038
Target:  5'- aAAUCCCGCUGCUGUUCGCCCACCCGGc -3'
miRNA:   3'- -UUAGGGCGACGACAAGCGGGUGGGCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.