Results 1 - 15 of 15 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26619 | 5' | -59.4 | NC_005357.1 | + | 35012 | 0.66 | 0.42796 |
Target: 5'- gGCCGGCCAUccGgUGCCCGGc-UUCAa -3' miRNA: 3'- -CGGCCGGUAc-UgGCGGGCCacAAGUa -5' |
|||||||
26619 | 5' | -59.4 | NC_005357.1 | + | 12695 | 0.66 | 0.409167 |
Target: 5'- gGCCcGCCuUGAuaGCCUGGcUGUUCAa -3' miRNA: 3'- -CGGcCGGuACUggCGGGCC-ACAAGUa -5' |
|||||||
26619 | 5' | -59.4 | NC_005357.1 | + | 41115 | 0.66 | 0.408241 |
Target: 5'- uGUCGGCCugGUGGCCGUCgcccugggcgcggCGGUGUgggCGg -3' miRNA: 3'- -CGGCCGG--UACUGGCGG-------------GCCACAa--GUa -5' |
|||||||
26619 | 5' | -59.4 | NC_005357.1 | + | 4431 | 0.66 | 0.399966 |
Target: 5'- uGCCGcGCCAgggGgaaGCCGCCagCGGUGgcaccgUCAUg -3' miRNA: 3'- -CGGC-CGGUa--C---UGGCGG--GCCACa-----AGUA- -5' |
|||||||
26619 | 5' | -59.4 | NC_005357.1 | + | 26514 | 0.66 | 0.390898 |
Target: 5'- aGCCGGCaucauucACCGCCaCGGUuUUCAg -3' miRNA: 3'- -CGGCCGguac---UGGCGG-GCCAcAAGUa -5' |
|||||||
26619 | 5' | -59.4 | NC_005357.1 | + | 13810 | 0.66 | 0.390898 |
Target: 5'- gGCCGGCCucaucCgCGCCCGGU--UCAa -3' miRNA: 3'- -CGGCCGGuacu-G-GCGGGCCAcaAGUa -5' |
|||||||
26619 | 5' | -59.4 | NC_005357.1 | + | 2660 | 0.67 | 0.381965 |
Target: 5'- --gGGCCAgcgG-UCGCCCaGGUGUUCGa -3' miRNA: 3'- cggCCGGUa--CuGGCGGG-CCACAAGUa -5' |
|||||||
26619 | 5' | -59.4 | NC_005357.1 | + | 40190 | 0.67 | 0.373169 |
Target: 5'- uGCCGGCCAag---GCCCGGcGUUUAUa -3' miRNA: 3'- -CGGCCGGUacuggCGGGCCaCAAGUA- -5' |
|||||||
26619 | 5' | -59.4 | NC_005357.1 | + | 30414 | 0.67 | 0.373169 |
Target: 5'- cGCCGGCCAcGGCCGCgCUGcUGgcCGa -3' miRNA: 3'- -CGGCCGGUaCUGGCG-GGCcACaaGUa -5' |
|||||||
26619 | 5' | -59.4 | NC_005357.1 | + | 6396 | 0.68 | 0.323342 |
Target: 5'- gGCCGGCCG-----GCCCGGUGUagUCGc -3' miRNA: 3'- -CGGCCGGUacuggCGGGCCACA--AGUa -5' |
|||||||
26619 | 5' | -59.4 | NC_005357.1 | + | 694 | 0.68 | 0.300353 |
Target: 5'- cGCCGGCCG-GGCCGCCCa-------- -3' miRNA: 3'- -CGGCCGGUaCUGGCGGGccacaagua -5' |
|||||||
26619 | 5' | -59.4 | NC_005357.1 | + | 34661 | 0.7 | 0.215288 |
Target: 5'- cGCCGGCgCA-GAUCGCgCCGGUGcugCAa -3' miRNA: 3'- -CGGCCG-GUaCUGGCG-GGCCACaa-GUa -5' |
|||||||
26619 | 5' | -59.4 | NC_005357.1 | + | 24576 | 0.73 | 0.151732 |
Target: 5'- gGCCGGCCAcggucgGGCCGUCCGGcGUg--- -3' miRNA: 3'- -CGGCCGGUa-----CUGGCGGGCCaCAagua -5' |
|||||||
26619 | 5' | -59.4 | NC_005357.1 | + | 41403 | 0.83 | 0.026357 |
Target: 5'- cGCCGGCCGUGGCCuUCCaGGUGUUCGa -3' miRNA: 3'- -CGGCCGGUACUGGcGGG-CCACAAGUa -5' |
|||||||
26619 | 5' | -59.4 | NC_005357.1 | + | 40683 | 1.06 | 0.000411 |
Target: 5'- gGCCGGCCAUGACCGCCCGGUGUUCAUc -3' miRNA: 3'- -CGGCCGGUACUGGCGGGCCACAAGUA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home