miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26619 5' -59.4 NC_005357.1 + 35012 0.66 0.42796
Target:  5'- gGCCGGCCAUccGgUGCCCGGc-UUCAa -3'
miRNA:   3'- -CGGCCGGUAc-UgGCGGGCCacAAGUa -5'
26619 5' -59.4 NC_005357.1 + 12695 0.66 0.409167
Target:  5'- gGCCcGCCuUGAuaGCCUGGcUGUUCAa -3'
miRNA:   3'- -CGGcCGGuACUggCGGGCC-ACAAGUa -5'
26619 5' -59.4 NC_005357.1 + 41115 0.66 0.408241
Target:  5'- uGUCGGCCugGUGGCCGUCgcccugggcgcggCGGUGUgggCGg -3'
miRNA:   3'- -CGGCCGG--UACUGGCGG-------------GCCACAa--GUa -5'
26619 5' -59.4 NC_005357.1 + 4431 0.66 0.399966
Target:  5'- uGCCGcGCCAgggGgaaGCCGCCagCGGUGgcaccgUCAUg -3'
miRNA:   3'- -CGGC-CGGUa--C---UGGCGG--GCCACa-----AGUA- -5'
26619 5' -59.4 NC_005357.1 + 26514 0.66 0.390898
Target:  5'- aGCCGGCaucauucACCGCCaCGGUuUUCAg -3'
miRNA:   3'- -CGGCCGguac---UGGCGG-GCCAcAAGUa -5'
26619 5' -59.4 NC_005357.1 + 13810 0.66 0.390898
Target:  5'- gGCCGGCCucaucCgCGCCCGGU--UCAa -3'
miRNA:   3'- -CGGCCGGuacu-G-GCGGGCCAcaAGUa -5'
26619 5' -59.4 NC_005357.1 + 2660 0.67 0.381965
Target:  5'- --gGGCCAgcgG-UCGCCCaGGUGUUCGa -3'
miRNA:   3'- cggCCGGUa--CuGGCGGG-CCACAAGUa -5'
26619 5' -59.4 NC_005357.1 + 40190 0.67 0.373169
Target:  5'- uGCCGGCCAag---GCCCGGcGUUUAUa -3'
miRNA:   3'- -CGGCCGGUacuggCGGGCCaCAAGUA- -5'
26619 5' -59.4 NC_005357.1 + 30414 0.67 0.373169
Target:  5'- cGCCGGCCAcGGCCGCgCUGcUGgcCGa -3'
miRNA:   3'- -CGGCCGGUaCUGGCG-GGCcACaaGUa -5'
26619 5' -59.4 NC_005357.1 + 6396 0.68 0.323342
Target:  5'- gGCCGGCCG-----GCCCGGUGUagUCGc -3'
miRNA:   3'- -CGGCCGGUacuggCGGGCCACA--AGUa -5'
26619 5' -59.4 NC_005357.1 + 694 0.68 0.300353
Target:  5'- cGCCGGCCG-GGCCGCCCa-------- -3'
miRNA:   3'- -CGGCCGGUaCUGGCGGGccacaagua -5'
26619 5' -59.4 NC_005357.1 + 34661 0.7 0.215288
Target:  5'- cGCCGGCgCA-GAUCGCgCCGGUGcugCAa -3'
miRNA:   3'- -CGGCCG-GUaCUGGCG-GGCCACaa-GUa -5'
26619 5' -59.4 NC_005357.1 + 24576 0.73 0.151732
Target:  5'- gGCCGGCCAcggucgGGCCGUCCGGcGUg--- -3'
miRNA:   3'- -CGGCCGGUa-----CUGGCGGGCCaCAagua -5'
26619 5' -59.4 NC_005357.1 + 41403 0.83 0.026357
Target:  5'- cGCCGGCCGUGGCCuUCCaGGUGUUCGa -3'
miRNA:   3'- -CGGCCGGUACUGGcGGG-CCACAAGUa -5'
26619 5' -59.4 NC_005357.1 + 40683 1.06 0.000411
Target:  5'- gGCCGGCCAUGACCGCCCGGUGUUCAUc -3'
miRNA:   3'- -CGGCCGGUACUGGCGGGCCACAAGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.