Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2662 | 5' | -58.3 | NC_001491.2 | + | 87701 | 1.1 | 0.001293 |
Target: 5'- gCUCUAUGCGAGCGGCAGCCCUCAGGCc -3' miRNA: 3'- -GAGAUACGCUCGCCGUCGGGAGUCCG- -5' |
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2662 | 5' | -58.3 | NC_001491.2 | + | 34979 | 0.75 | 0.30455 |
Target: 5'- aCUCUcgGCGcuGCuGGCGGCCCUgGGGa -3' miRNA: 3'- -GAGAuaCGCu-CG-CCGUCGGGAgUCCg -5' |
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2662 | 5' | -58.3 | NC_001491.2 | + | 33467 | 0.71 | 0.539033 |
Target: 5'- -----cGCGaAGCGuacacccgggucugcGCGGCCCUCGGGCc -3' miRNA: 3'- gagauaCGC-UCGC---------------CGUCGGGAGUCCG- -5' |
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2662 | 5' | -58.3 | NC_001491.2 | + | 3953 | 0.71 | 0.515545 |
Target: 5'- gCUCUucugaGUGCGAucguaGCGGCGGCUCauggccacCAGGCg -3' miRNA: 3'- -GAGA-----UACGCU-----CGCCGUCGGGa-------GUCCG- -5' |
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2662 | 5' | -58.3 | NC_001491.2 | + | 116589 | 0.71 | 0.535091 |
Target: 5'- gUgUAUGCGAugcuGCGuaGGCCCggCAGGCu -3' miRNA: 3'- gAgAUACGCU----CGCcgUCGGGa-GUCCG- -5' |
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2662 | 5' | -58.3 | NC_001491.2 | + | 12474 | 0.7 | 0.564873 |
Target: 5'- uCUCccgcccgGCGGGCGGCGggcGCCCgCGGGUc -3' miRNA: 3'- -GAGaua----CGCUCGCCGU---CGGGaGUCCG- -5' |
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2662 | 5' | -58.3 | NC_001491.2 | + | 141430 | 0.69 | 0.635674 |
Target: 5'- gUCUAU-CGAGUGGCAcuGCCUUCcaagcgccAGGCu -3' miRNA: 3'- gAGAUAcGCUCGCCGU--CGGGAG--------UCCG- -5' |
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2662 | 5' | -58.3 | NC_001491.2 | + | 49306 | 0.68 | 0.686299 |
Target: 5'- ---gGUGCGAGCucaGCGGCCCUuccCGGGa -3' miRNA: 3'- gagaUACGCUCGc--CGUCGGGA---GUCCg -5' |
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2662 | 5' | -58.3 | NC_001491.2 | + | 22885 | 0.68 | 0.655989 |
Target: 5'- aUCUucaguaguUGCGAGUGGCAGCuuuucacauacuCCUCugGGGUa -3' miRNA: 3'- gAGAu-------ACGCUCGCCGUCG------------GGAG--UCCG- -5' |
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2662 | 5' | -58.3 | NC_001491.2 | + | 4851 | 0.68 | 0.666122 |
Target: 5'- -----cGCcgGAGCGGCAGCuCUUCGGGg -3' miRNA: 3'- gagauaCG--CUCGCCGUCG-GGAGUCCg -5' |
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2662 | 5' | -58.3 | NC_001491.2 | + | 3827 | 0.68 | 0.666122 |
Target: 5'- -gCUGgccGCGgcAGCGGCGGCCUgggcCGGGUa -3' miRNA: 3'- gaGAUa--CGC--UCGCCGUCGGGa---GUCCG- -5' |
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2662 | 5' | -58.3 | NC_001491.2 | + | 35654 | 0.68 | 0.675219 |
Target: 5'- cCUCgccUGCGGccggcGCGGCgcuggggccguggAGCCCUCGGaGCu -3' miRNA: 3'- -GAGau-ACGCU-----CGCCG-------------UCGGGAGUC-CG- -5' |
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2662 | 5' | -58.3 | NC_001491.2 | + | 60589 | 0.68 | 0.686299 |
Target: 5'- uUCU-UGCGAGCGGgguugAGCgCUCGGGg -3' miRNA: 3'- gAGAuACGCUCGCCg----UCGgGAGUCCg -5' |
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2662 | 5' | -58.3 | NC_001491.2 | + | 136895 | 0.68 | 0.706299 |
Target: 5'- gCUCgc-GUGuGCGGCAGCCacgcgaCUCAcGGCc -3' miRNA: 3'- -GAGauaCGCuCGCCGUCGG------GAGU-CCG- -5' |
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2662 | 5' | -58.3 | NC_001491.2 | + | 3725 | 0.67 | 0.764525 |
Target: 5'- -----cGCGGccGCGGCAGCCUugcgUCGGGg -3' miRNA: 3'- gagauaCGCU--CGCCGUCGGG----AGUCCg -5' |
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2662 | 5' | -58.3 | NC_001491.2 | + | 58283 | 0.67 | 0.71621 |
Target: 5'- gUCUG---GGGUGGCAGCCUcagagCGGGCg -3' miRNA: 3'- gAGAUacgCUCGCCGUCGGGa----GUCCG- -5' |
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2662 | 5' | -58.3 | NC_001491.2 | + | 69103 | 0.67 | 0.71621 |
Target: 5'- ---cGUGCGuaguGCGGCGGCUgcgUAGGCg -3' miRNA: 3'- gagaUACGCu---CGCCGUCGGga-GUCCG- -5' |
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2662 | 5' | -58.3 | NC_001491.2 | + | 77367 | 0.67 | 0.764525 |
Target: 5'- gUCUuUGUGGGCgGGCGcGCCUggcUCGGGUu -3' miRNA: 3'- gAGAuACGCUCG-CCGU-CGGG---AGUCCG- -5' |
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2662 | 5' | -58.3 | NC_001491.2 | + | 79188 | 0.67 | 0.735812 |
Target: 5'- aUCUcgGCGuugaagguGCGcGCGGCCCgcucCAGGg -3' miRNA: 3'- gAGAuaCGCu-------CGC-CGUCGGGa---GUCCg -5' |
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2662 | 5' | -58.3 | NC_001491.2 | + | 12185 | 0.67 | 0.764525 |
Target: 5'- -----aGCGAGCGcGCAGCggaagaCCUCGGuGCc -3' miRNA: 3'- gagauaCGCUCGC-CGUCG------GGAGUC-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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