miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2662 5' -58.3 NC_001491.2 + 77367 0.67 0.764525
Target:  5'- gUCUuUGUGGGCgGGCGcGCCUggcUCGGGUu -3'
miRNA:   3'- gAGAuACGCUCG-CCGU-CGGG---AGUCCG- -5'
2662 5' -58.3 NC_001491.2 + 79188 0.67 0.735812
Target:  5'- aUCUcgGCGuugaagguGCGcGCGGCCCgcucCAGGg -3'
miRNA:   3'- gAGAuaCGCu-------CGC-CGUCGGGa---GUCCg -5'
2662 5' -58.3 NC_001491.2 + 87701 1.1 0.001293
Target:  5'- gCUCUAUGCGAGCGGCAGCCCUCAGGCc -3'
miRNA:   3'- -GAGAUACGCUCGCCGUCGGGAGUCCG- -5'
2662 5' -58.3 NC_001491.2 + 116589 0.71 0.535091
Target:  5'- gUgUAUGCGAugcuGCGuaGGCCCggCAGGCu -3'
miRNA:   3'- gAgAUACGCU----CGCcgUCGGGa-GUCCG- -5'
2662 5' -58.3 NC_001491.2 + 119208 0.66 0.801144
Target:  5'- -----cGCGAGCuGUGcGCCCUgGGGCu -3'
miRNA:   3'- gagauaCGCUCGcCGU-CGGGAgUCCG- -5'
2662 5' -58.3 NC_001491.2 + 136895 0.68 0.706299
Target:  5'- gCUCgc-GUGuGCGGCAGCCacgcgaCUCAcGGCc -3'
miRNA:   3'- -GAGauaCGCuCGCCGUCGG------GAGU-CCG- -5'
2662 5' -58.3 NC_001491.2 + 141430 0.69 0.635674
Target:  5'- gUCUAU-CGAGUGGCAcuGCCUUCcaagcgccAGGCu -3'
miRNA:   3'- gAGAUAcGCUCGCCGU--CGGGAG--------UCCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.