Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26620 | 3' | -57.8 | NC_005357.1 | + | 25004 | 0.68 | 0.34769 |
Target: 5'- gGGCCaCUGCUCAaGGgcgaCGugGGCGc -3' miRNA: 3'- gCCGGcGACGAGUaCUa---GCugCCGUu -5' |
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26620 | 3' | -57.8 | NC_005357.1 | + | 25164 | 0.76 | 0.10034 |
Target: 5'- cCGGCC-CUcGCUCGUGGUCGGCGGg-- -3' miRNA: 3'- -GCCGGcGA-CGAGUACUAGCUGCCguu -5' |
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26620 | 3' | -57.8 | NC_005357.1 | + | 25759 | 0.71 | 0.21336 |
Target: 5'- gGGCgCGCUGCUgGg---CGGCGGCAAc -3' miRNA: 3'- gCCG-GCGACGAgUacuaGCUGCCGUU- -5' |
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26620 | 3' | -57.8 | NC_005357.1 | + | 29763 | 0.69 | 0.292097 |
Target: 5'- uCGGCUGCUGCcaggcgCGUGcgCGAgauuuCGGCAu -3' miRNA: 3'- -GCCGGCGACGa-----GUACuaGCU-----GCCGUu -5' |
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26620 | 3' | -57.8 | NC_005357.1 | + | 30564 | 0.67 | 0.391806 |
Target: 5'- cCGGCCGCUGUagaugCGgcaGAUgGugGGCu- -3' miRNA: 3'- -GCCGGCGACGa----GUa--CUAgCugCCGuu -5' |
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26620 | 3' | -57.8 | NC_005357.1 | + | 31084 | 0.66 | 0.438425 |
Target: 5'- gGuGCCGCUGCUCAcc-UCGGugcaggcCGGCGAg -3' miRNA: 3'- gC-CGGCGACGAGUacuAGCU-------GCCGUU- -5' |
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26620 | 3' | -57.8 | NC_005357.1 | + | 31187 | 0.67 | 0.401056 |
Target: 5'- gGGCCGCgcacGUUCugccugacGGUCGAgGGCGAa -3' miRNA: 3'- gCCGGCGa---CGAGua------CUAGCUgCCGUU- -5' |
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26620 | 3' | -57.8 | NC_005357.1 | + | 31371 | 0.68 | 0.373728 |
Target: 5'- aCGGCCggaaGCUGCUCAaggcguUGAacccCGACuGGCAAc -3' miRNA: 3'- -GCCGG----CGACGAGU------ACUa---GCUG-CCGUU- -5' |
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26620 | 3' | -57.8 | NC_005357.1 | + | 32928 | 0.67 | 0.429624 |
Target: 5'- aCGGCUGCUGUUCGgccaGggCGAccaCGGCu- -3' miRNA: 3'- -GCCGGCGACGAGUa---CuaGCU---GCCGuu -5' |
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26620 | 3' | -57.8 | NC_005357.1 | + | 34378 | 0.69 | 0.30724 |
Target: 5'- uGGgCGC-GCgUCAUGGaCGGCGGCAAg -3' miRNA: 3'- gCCgGCGaCG-AGUACUaGCUGCCGUU- -5' |
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26620 | 3' | -57.8 | NC_005357.1 | + | 35108 | 0.75 | 0.115797 |
Target: 5'- cCGGCUGCUGCguucgCAgaccAUCGACGGCGc -3' miRNA: 3'- -GCCGGCGACGa----GUac--UAGCUGCCGUu -5' |
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26620 | 3' | -57.8 | NC_005357.1 | + | 35962 | 0.68 | 0.373728 |
Target: 5'- gCGGCgUGCaGUUCcUGcgCGACGGCGAc -3' miRNA: 3'- -GCCG-GCGaCGAGuACuaGCUGCCGUU- -5' |
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26620 | 3' | -57.8 | NC_005357.1 | + | 39435 | 0.66 | 0.44932 |
Target: 5'- -cGCUGCUGCgcuau-UCGGCGGCAAc -3' miRNA: 3'- gcCGGCGACGaguacuAGCUGCCGUU- -5' |
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26620 | 3' | -57.8 | NC_005357.1 | + | 41266 | 0.66 | 0.439409 |
Target: 5'- aCGGCUGUccUUCAccAUCGACGGCGAg -3' miRNA: 3'- -GCCGGCGacGAGUacUAGCUGCCGUU- -5' |
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26620 | 3' | -57.8 | NC_005357.1 | + | 41299 | 1.07 | 0.000506 |
Target: 5'- aCGGCCGCUGCUCAUGAUCGACGGCAAg -3' miRNA: 3'- -GCCGGCGACGAGUACUAGCUGCCGUU- -5' |
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26620 | 3' | -57.8 | NC_005357.1 | + | 42050 | 0.67 | 0.382696 |
Target: 5'- uGGCCGC-GCUCA--AUCGGCaGGCc- -3' miRNA: 3'- gCCGGCGaCGAGUacUAGCUG-CCGuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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