Results 61 - 80 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
26620 | 5' | -53.9 | NC_005357.1 | + | 33662 | 0.68 | 0.565992 |
Target: 5'- cGCCGCgUGCUGcccgaagcggcACGUGAA-UACGCGCg -3' miRNA: 3'- aUGGCG-GCGGU-----------UGUACUUcAUGCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 1157 | 0.68 | 0.574986 |
Target: 5'- cGCuCGCCGUCgAugGUGAAGgacagccguauCGCGCu -3' miRNA: 3'- aUG-GCGGCGG-UugUACUUCau---------GCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 24872 | 0.68 | 0.576112 |
Target: 5'- cACCGgCGCCGACAucauucUGAccaaucaAGUcaacgcggugGCGCGCu -3' miRNA: 3'- aUGGCgGCGGUUGU------ACU-------UCA----------UGCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 10004 | 0.68 | 0.577239 |
Target: 5'- cGCUGCCGUCGucuugGCA-GAcGUgGCGCGCg -3' miRNA: 3'- aUGGCGGCGGU-----UGUaCUuCA-UGCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 18515 | 0.68 | 0.577239 |
Target: 5'- cGCCuaUGCCGGCAUgGAAGccGCGgGCg -3' miRNA: 3'- aUGGcgGCGGUUGUA-CUUCa-UGCgCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 40271 | 0.68 | 0.577239 |
Target: 5'- aACUGuUCGCCAACGUGuacgGCgGCGCg -3' miRNA: 3'- aUGGC-GGCGGUUGUACuucaUG-CGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 16615 | 0.67 | 0.622616 |
Target: 5'- uUGgCGCCGCCGuugGUGAAgagguuGUugGUGCa -3' miRNA: 3'- -AUgGCGGCGGUug-UACUU------CAugCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 23460 | 0.67 | 0.634008 |
Target: 5'- cGCgCGUacaCGCCGGCGUGGaacaGGUGCGcCGUg -3' miRNA: 3'- aUG-GCG---GCGGUUGUACU----UCAUGC-GCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 42117 | 0.67 | 0.611233 |
Target: 5'- gUACgGCaCGCCcugGACG-GAAGaGCGCGCc -3' miRNA: 3'- -AUGgCG-GCGG---UUGUaCUUCaUGCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 4265 | 0.67 | 0.634008 |
Target: 5'- gGCCGUcagCGCCGGCAUGGugauGgcCGUGUc -3' miRNA: 3'- aUGGCG---GCGGUUGUACUu---CauGCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 27854 | 0.67 | 0.634008 |
Target: 5'- cGCCGCUGCUcaagAACGUGuc---CGCGCu -3' miRNA: 3'- aUGGCGGCGG----UUGUACuucauGCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 37004 | 0.67 | 0.634008 |
Target: 5'- --aCGCCGCCAuccgcgcCGUGGAgcGUACGCa- -3' miRNA: 3'- augGCGGCGGUu------GUACUU--CAUGCGcg -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 5467 | 0.67 | 0.649952 |
Target: 5'- -cCCGCCgggcggcgagguguuGCCGAUggGggGUACG-GCg -3' miRNA: 3'- auGGCGG---------------CGGUUGuaCuuCAUGCgCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 8630 | 0.67 | 0.640844 |
Target: 5'- gGCCGCUGCgGugGcGAGGUcgccggccuucauCGCGCg -3' miRNA: 3'- aUGGCGGCGgUugUaCUUCAu------------GCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 35064 | 0.67 | 0.645399 |
Target: 5'- cGCCGCuggacgaacgaCGCCGAgGUcGAGgcCGCGCu -3' miRNA: 3'- aUGGCG-----------GCGGUUgUAcUUCauGCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 13764 | 0.67 | 0.656776 |
Target: 5'- -uCCaG-CGCCGACAUGAGcgcaaucuuGUGCGCGUu -3' miRNA: 3'- auGG-CgGCGGUUGUACUU---------CAUGCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 32448 | 0.67 | 0.661321 |
Target: 5'- gACUGCCccuacgcccccuacuGCCGAgGUGggGgcggccgAUGCGCc -3' miRNA: 3'- aUGGCGG---------------CGGUUgUACuuCa------UGCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 4172 | 0.67 | 0.634008 |
Target: 5'- cGCCGUgGUCGAgGUGuagccAGUGgGCGCc -3' miRNA: 3'- aUGGCGgCGGUUgUACu----UCAUgCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 1057 | 0.67 | 0.611233 |
Target: 5'- -gUCGCCGCgAACcgGcguccAGUaACGCGCg -3' miRNA: 3'- auGGCGGCGgUUGuaCu----UCA-UGCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 18548 | 0.67 | 0.621477 |
Target: 5'- gGCCGaaGUCGAUcacgucgGUGGAGgcCGCGCu -3' miRNA: 3'- aUGGCggCGGUUG-------UACUUCauGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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