miRNA display CGI


Results 81 - 100 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26620 5' -53.9 NC_005357.1 + 8630 0.67 0.640844
Target:  5'- gGCCGCUGCgGugGcGAGGUcgccggccuucauCGCGCg -3'
miRNA:   3'- aUGGCGGCGgUugUaCUUCAu------------GCGCG- -5'
26620 5' -53.9 NC_005357.1 + 893 0.67 0.656776
Target:  5'- gGCCGCCGCguuguucCA-GAAGUugacCGCGCu -3'
miRNA:   3'- aUGGCGGCGguu----GUaCUUCAu---GCGCG- -5'
26620 5' -53.9 NC_005357.1 + 33853 0.67 0.641983
Target:  5'- gGCCGCaCGCgCGGCcuacgacgcccaggAUGAGGUcgaGCGCg -3'
miRNA:   3'- aUGGCG-GCG-GUUG--------------UACUUCAug-CGCG- -5'
26620 5' -53.9 NC_005357.1 + 9204 0.67 0.634008
Target:  5'- gUGCCGCgauaGCCAGCGgugGccGUGC-CGCg -3'
miRNA:   3'- -AUGGCGg---CGGUUGUa--CuuCAUGcGCG- -5'
26620 5' -53.9 NC_005357.1 + 9156 0.67 0.634008
Target:  5'- gUGCCGCgauaGCCAGCGgugGccGUGC-CGCg -3'
miRNA:   3'- -AUGGCGg---CGGUUGUa--CuuCAUGcGCG- -5'
26620 5' -53.9 NC_005357.1 + 9108 0.67 0.634008
Target:  5'- gUGCCGCgauaGCCAGCGgugGccGUGC-CGCg -3'
miRNA:   3'- -AUGGCGg---CGGUUGUa--CuuCAUGcGCG- -5'
26620 5' -53.9 NC_005357.1 + 9060 0.67 0.634008
Target:  5'- gUGCCGCgauaGCCAGCGgugGccGUGC-CGCg -3'
miRNA:   3'- -AUGGCGg---CGGUUGUa--CuuCAUGcGCG- -5'
26620 5' -53.9 NC_005357.1 + 32448 0.67 0.661321
Target:  5'- gACUGCCccuacgcccccuacuGCCGAgGUGggGgcggccgAUGCGCc -3'
miRNA:   3'- aUGGCGG---------------CGGUUgUACuuCa------UGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 27854 0.67 0.634008
Target:  5'- cGCCGCUGCUcaagAACGUGuc---CGCGCu -3'
miRNA:   3'- aUGGCGGCGG----UUGUACuucauGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 37004 0.67 0.634008
Target:  5'- --aCGCCGCCAuccgcgcCGUGGAgcGUACGCa- -3'
miRNA:   3'- augGCGGCGGUu------GUACUU--CAUGCGcg -5'
26620 5' -53.9 NC_005357.1 + 35064 0.67 0.645399
Target:  5'- cGCCGCuggacgaacgaCGCCGAgGUcGAGgcCGCGCu -3'
miRNA:   3'- aUGGCG-----------GCGGUUgUAcUUCauGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 16359 0.67 0.656776
Target:  5'- -cCCGCCccgaguucGCCGagcGCAUGGA--GCGCGCc -3'
miRNA:   3'- auGGCGG--------CGGU---UGUACUUcaUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 5467 0.67 0.649952
Target:  5'- -cCCGCCgggcggcgagguguuGCCGAUggGggGUACG-GCg -3'
miRNA:   3'- auGGCGG---------------CGGUUGuaCuuCAUGCgCG- -5'
26620 5' -53.9 NC_005357.1 + 13764 0.67 0.656776
Target:  5'- -uCCaG-CGCCGACAUGAGcgcaaucuuGUGCGCGUu -3'
miRNA:   3'- auGG-CgGCGGUUGUACUU---------CAUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 15569 0.66 0.724109
Target:  5'- aUGgCGCCGUCA--GUGAcg-ACGCGCu -3'
miRNA:   3'- -AUgGCGGCGGUugUACUucaUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 40277 0.66 0.713059
Target:  5'- --aUGCCGCCAGCAaGAccauaaAGUGCcUGCa -3'
miRNA:   3'- augGCGGCGGUUGUaCU------UCAUGcGCG- -5'
26620 5' -53.9 NC_005357.1 + 18046 0.66 0.713059
Target:  5'- gGCUGCUuggggGCCuuaccGGCGcGggGUGCGUGCu -3'
miRNA:   3'- aUGGCGG-----CGG-----UUGUaCuuCAUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 8120 0.66 0.713059
Target:  5'- cACCGCgCgGCCGGCGUu-GGUuguggGCGUGCg -3'
miRNA:   3'- aUGGCG-G-CGGUUGUAcuUCA-----UGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 19635 0.66 0.713059
Target:  5'- gGCCGCgacaucgGCCAGCGUcGGGUugGUGg -3'
miRNA:   3'- aUGGCGg------CGGUUGUAcUUCAugCGCg -5'
26620 5' -53.9 NC_005357.1 + 37638 0.66 0.724109
Target:  5'- cAgCGCCaGCCGGCGUGc--UGgGCGCa -3'
miRNA:   3'- aUgGCGG-CGGUUGUACuucAUgCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.