Results 81 - 100 of 121 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26620 | 5' | -53.9 | NC_005357.1 | + | 17444 | 0.69 | 0.54368 |
Target: 5'- gGCC-CCGCCAGCAUcGAGGccAgGUGCc -3' miRNA: 3'- aUGGcGGCGGUUGUA-CUUCa-UgCGCG- -5' |
|||||||
26620 | 5' | -53.9 | NC_005357.1 | + | 13060 | 0.69 | 0.54368 |
Target: 5'- gUGCgGCCGUCuGCAUGuuGaaUugGCGCu -3' miRNA: 3'- -AUGgCGGCGGuUGUACuuC--AugCGCG- -5' |
|||||||
26620 | 5' | -53.9 | NC_005357.1 | + | 38691 | 0.69 | 0.54368 |
Target: 5'- gUGCCGCCcucaucaaauccGCgAGCAUGAGcggAUGCGCc -3' miRNA: 3'- -AUGGCGG------------CGgUUGUACUUca-UGCGCG- -5' |
|||||||
26620 | 5' | -53.9 | NC_005357.1 | + | 23357 | 0.69 | 0.542571 |
Target: 5'- -cUCGCCGCCGAUgaacacgGUGgcGUGCcCGCu -3' miRNA: 3'- auGGCGGCGGUUG-------UACuuCAUGcGCG- -5' |
|||||||
26620 | 5' | -53.9 | NC_005357.1 | + | 19319 | 0.69 | 0.52057 |
Target: 5'- uUACCGCUGUCGcCGUGGGcgccgccGUugGCGUc -3' miRNA: 3'- -AUGGCGGCGGUuGUACUU-------CAugCGCG- -5' |
|||||||
26620 | 5' | -53.9 | NC_005357.1 | + | 1590 | 0.69 | 0.510783 |
Target: 5'- gGCCGCCGCCuuCcugGUGGucgAGUGCGUugguuuGCg -3' miRNA: 3'- aUGGCGGCGGuuG---UACU---UCAUGCG------CG- -5' |
|||||||
26620 | 5' | -53.9 | NC_005357.1 | + | 23561 | 0.69 | 0.510783 |
Target: 5'- gGCCGacauCGCCGGCA---GGUGCGgGCg -3' miRNA: 3'- aUGGCg---GCGGUUGUacuUCAUGCgCG- -5' |
|||||||
26620 | 5' | -53.9 | NC_005357.1 | + | 41396 | 0.69 | 0.5097 |
Target: 5'- aUGCUGCCGCCGGcCGUGGccuuccaGGUguucgACGCuGCg -3' miRNA: 3'- -AUGGCGGCGGUU-GUACU-------UCA-----UGCG-CG- -5' |
|||||||
26620 | 5' | -53.9 | NC_005357.1 | + | 28153 | 0.69 | 0.504301 |
Target: 5'- cAUCGCCGaCAGCAUGGugcagcaggccaaccAGuUGCGCGUg -3' miRNA: 3'- aUGGCGGCgGUUGUACU---------------UC-AUGCGCG- -5' |
|||||||
26620 | 5' | -53.9 | NC_005357.1 | + | 18676 | 0.69 | 0.499999 |
Target: 5'- gGCCcgguGgCGCCGGCAUGgcGcugcUGCGCGCc -3' miRNA: 3'- aUGG----CgGCGGUUGUACuuC----AUGCGCG- -5' |
|||||||
26620 | 5' | -53.9 | NC_005357.1 | + | 8293 | 0.69 | 0.499999 |
Target: 5'- cGCUGCCggggcagugcaGCCAGC----GGUGCGCGCu -3' miRNA: 3'- aUGGCGG-----------CGGUUGuacuUCAUGCGCG- -5' |
|||||||
26620 | 5' | -53.9 | NC_005357.1 | + | 13774 | 0.7 | 0.478744 |
Target: 5'- gGCCGCCGgcaCCGAUcUGGcacUGCGCGCg -3' miRNA: 3'- aUGGCGGC---GGUUGuACUuc-AUGCGCG- -5' |
|||||||
26620 | 5' | -53.9 | NC_005357.1 | + | 41284 | 0.7 | 0.472454 |
Target: 5'- gACCGCCGCCGuaGCGcGAgcuaacgguuacaccGGgccgAUGCGCg -3' miRNA: 3'- aUGGCGGCGGU--UGUaCU---------------UCa---UGCGCG- -5' |
|||||||
26620 | 5' | -53.9 | NC_005357.1 | + | 15765 | 0.7 | 0.457943 |
Target: 5'- cGuuGCCGCCAAU----GGUGCGaCGCa -3' miRNA: 3'- aUggCGGCGGUUGuacuUCAUGC-GCG- -5' |
|||||||
26620 | 5' | -53.9 | NC_005357.1 | + | 27718 | 0.7 | 0.447725 |
Target: 5'- gGCuCGCCGCCggUcauggacuugAUGAGGcccuCGCGCa -3' miRNA: 3'- aUG-GCGGCGGuuG----------UACUUCau--GCGCG- -5' |
|||||||
26620 | 5' | -53.9 | NC_005357.1 | + | 17203 | 0.7 | 0.447725 |
Target: 5'- cGCCGCCGCCGAa--GGAGcguugcaggACGCGg -3' miRNA: 3'- aUGGCGGCGGUUguaCUUCa--------UGCGCg -5' |
|||||||
26620 | 5' | -53.9 | NC_005357.1 | + | 21737 | 0.7 | 0.447725 |
Target: 5'- -cUCGUCGuCCAGCccAUaGAGUGCGCGCa -3' miRNA: 3'- auGGCGGC-GGUUG--UAcUUCAUGCGCG- -5' |
|||||||
26620 | 5' | -53.9 | NC_005357.1 | + | 33735 | 0.71 | 0.427676 |
Target: 5'- gACCcgGCCaguacaCCAACGccGAGGUGCGCGCg -3' miRNA: 3'- aUGG--CGGc-----GGUUGUa-CUUCAUGCGCG- -5' |
|||||||
26620 | 5' | -53.9 | NC_005357.1 | + | 33770 | 0.71 | 0.417852 |
Target: 5'- aGCCGCUGCacACAgcGAGUACgGCGCg -3' miRNA: 3'- aUGGCGGCGguUGUacUUCAUG-CGCG- -5' |
|||||||
26620 | 5' | -53.9 | NC_005357.1 | + | 21935 | 0.71 | 0.408168 |
Target: 5'- cACCGCCGaccaaggcCCAACggGGcacAGUGCGCGg -3' miRNA: 3'- aUGGCGGC--------GGUUGuaCU---UCAUGCGCg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home