miRNA display CGI


Results 41 - 60 of 121 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26620 5' -53.9 NC_005357.1 + 14943 0.72 0.353112
Target:  5'- gGCCGCCGgCAuccucGCGUGGugcguGgcgGCGCGCu -3'
miRNA:   3'- aUGGCGGCgGU-----UGUACUu----Ca--UGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 15000 0.66 0.679446
Target:  5'- cUGCgGCCGCCGggcGCGgUGcgccagGCGCGCg -3'
miRNA:   3'- -AUGgCGGCGGU---UGU-ACuuca--UGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 15569 0.66 0.724109
Target:  5'- aUGgCGCCGUCA--GUGAcg-ACGCGCu -3'
miRNA:   3'- -AUgGCGGCGGUugUACUucaUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 15765 0.7 0.457943
Target:  5'- cGuuGCCGCCAAU----GGUGCGaCGCa -3'
miRNA:   3'- aUggCGGCGGUUGuacuUCAUGC-GCG- -5'
26620 5' -53.9 NC_005357.1 + 16359 0.67 0.656776
Target:  5'- -cCCGCCccgaguucGCCGagcGCAUGGA--GCGCGCc -3'
miRNA:   3'- auGGCGG--------CGGU---UGUACUUcaUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 16615 0.67 0.622616
Target:  5'- uUGgCGCCGCCGuugGUGAAgagguuGUugGUGCa -3'
miRNA:   3'- -AUgGCGGCGGUug-UACUU------CAugCGCG- -5'
26620 5' -53.9 NC_005357.1 + 16671 0.72 0.344462
Target:  5'- uUGCCGCCGcCCAGCA------GCGCGCc -3'
miRNA:   3'- -AUGGCGGC-GGUUGUacuucaUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 16698 0.68 0.599869
Target:  5'- gUGCUGCCGCCG--GUGAGG-ACGaCGa -3'
miRNA:   3'- -AUGGCGGCGGUugUACUUCaUGC-GCg -5'
26620 5' -53.9 NC_005357.1 + 17203 0.7 0.447725
Target:  5'- cGCCGCCGCCGAa--GGAGcguugcaggACGCGg -3'
miRNA:   3'- aUGGCGGCGGUUguaCUUCa--------UGCGCg -5'
26620 5' -53.9 NC_005357.1 + 17444 0.69 0.54368
Target:  5'- gGCC-CCGCCAGCAUcGAGGccAgGUGCc -3'
miRNA:   3'- aUGGcGGCGGUUGUA-CUUCa-UgCGCG- -5'
26620 5' -53.9 NC_005357.1 + 17782 0.68 0.599869
Target:  5'- -gUCGCgCGCgAACGgauaGAAGcGCGCGCa -3'
miRNA:   3'- auGGCG-GCGgUUGUa---CUUCaUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 18046 0.66 0.713059
Target:  5'- gGCUGCUuggggGCCuuaccGGCGcGggGUGCGUGCu -3'
miRNA:   3'- aUGGCGG-----CGG-----UUGUaCuuCAUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 18515 0.68 0.577239
Target:  5'- cGCCuaUGCCGGCAUgGAAGccGCGgGCg -3'
miRNA:   3'- aUGGcgGCGGUUGUA-CUUCa-UGCgCG- -5'
26620 5' -53.9 NC_005357.1 + 18548 0.67 0.621477
Target:  5'- gGCCGaaGUCGAUcacgucgGUGGAGgcCGCGCu -3'
miRNA:   3'- aUGGCggCGGUUG-------UACUUCauGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 18676 0.69 0.499999
Target:  5'- gGCCcgguGgCGCCGGCAUGgcGcugcUGCGCGCc -3'
miRNA:   3'- aUGG----CgGCGGUUGUACuuC----AUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 18910 0.68 0.588534
Target:  5'- --gCGCCGCCug---GAAG-GCGCGCu -3'
miRNA:   3'- augGCGGCGGuuguaCUUCaUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 18964 0.66 0.66813
Target:  5'- cACCuGUuccaCGCCGGCGU---GUACGCGCg -3'
miRNA:   3'- aUGG-CG----GCGGUUGUAcuuCAUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 19049 0.68 0.599869
Target:  5'- gGCCGCCGgCGGCGUcGAucaGCGUGUc -3'
miRNA:   3'- aUGGCGGCgGUUGUA-CUucaUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 19319 0.69 0.52057
Target:  5'- uUACCGCUGUCGcCGUGGGcgccgccGUugGCGUc -3'
miRNA:   3'- -AUGGCGGCGGUuGUACUU-------CAugCGCG- -5'
26620 5' -53.9 NC_005357.1 + 19635 0.66 0.713059
Target:  5'- gGCCGCgacaucgGCCAGCGUcGGGUugGUGg -3'
miRNA:   3'- aUGGCGg------CGGUUGUAcUUCAugCGCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.