miRNA display CGI


Results 61 - 80 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26620 5' -53.9 NC_005357.1 + 20004 0.73 0.311399
Target:  5'- cGCCGCCGUCAagGCGUGGcuGGcgaacgucACGCGCu -3'
miRNA:   3'- aUGGCGGCGGU--UGUACU--UCa-------UGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 20193 0.66 0.713059
Target:  5'- cAUCGCgGCCGACAaccAGGgcCGCGUc -3'
miRNA:   3'- aUGGCGgCGGUUGUac-UUCauGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 21737 0.7 0.447725
Target:  5'- -cUCGUCGuCCAGCccAUaGAGUGCGCGCa -3'
miRNA:   3'- auGGCGGC-GGUUG--UAcUUCAUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 21935 0.71 0.408168
Target:  5'- cACCGCCGaccaaggcCCAACggGGcacAGUGCGCGg -3'
miRNA:   3'- aUGGCGGC--------GGUUGuaCU---UCAUGCGCg -5'
26620 5' -53.9 NC_005357.1 + 22133 0.68 0.565992
Target:  5'- gGCCGCCGagCAACccGcuacuGGUGCGgGCa -3'
miRNA:   3'- aUGGCGGCg-GUUGuaCu----UCAUGCgCG- -5'
26620 5' -53.9 NC_005357.1 + 22332 0.76 0.214812
Target:  5'- gUGCCGaacgCGCCGaguucuucguACAUGGAGUGCaGCGCg -3'
miRNA:   3'- -AUGGCg---GCGGU----------UGUACUUCAUG-CGCG- -5'
26620 5' -53.9 NC_005357.1 + 22833 0.71 0.379973
Target:  5'- cGCCGCgcUGCCGACAgccGAcAGcGCGCGCu -3'
miRNA:   3'- aUGGCG--GCGGUUGUa--CU-UCaUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 23357 0.69 0.542571
Target:  5'- -cUCGCCGCCGAUgaacacgGUGgcGUGCcCGCu -3'
miRNA:   3'- auGGCGGCGGUUG-------UACuuCAUGcGCG- -5'
26620 5' -53.9 NC_005357.1 + 23460 0.67 0.634008
Target:  5'- cGCgCGUacaCGCCGGCGUGGaacaGGUGCGcCGUg -3'
miRNA:   3'- aUG-GCG---GCGGUUGUACU----UCAUGC-GCG- -5'
26620 5' -53.9 NC_005357.1 + 23561 0.69 0.510783
Target:  5'- gGCCGacauCGCCGGCA---GGUGCGgGCg -3'
miRNA:   3'- aUGGCg---GCGGUUGUacuUCAUGCgCG- -5'
26620 5' -53.9 NC_005357.1 + 24872 0.68 0.576112
Target:  5'- cACCGgCGCCGACAucauucUGAccaaucaAGUcaacgcggugGCGCGCu -3'
miRNA:   3'- aUGGCgGCGGUUGU------ACU-------UCA----------UGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 24902 0.67 0.634008
Target:  5'- --aCGCgCGCCGGaAUGAAcGUGCGCGa -3'
miRNA:   3'- augGCG-GCGGUUgUACUU-CAUGCGCg -5'
26620 5' -53.9 NC_005357.1 + 25534 0.68 0.565992
Target:  5'- uUGCCGCCGCCGGCA--------GCGCc -3'
miRNA:   3'- -AUGGCGGCGGUUGUacuucaugCGCG- -5'
26620 5' -53.9 NC_005357.1 + 27298 0.86 0.040541
Target:  5'- -uCCGCCGCCAGCAUGggGU-CGgGCc -3'
miRNA:   3'- auGGCGGCGGUUGUACuuCAuGCgCG- -5'
26620 5' -53.9 NC_005357.1 + 27590 0.66 0.71749
Target:  5'- cGCUgGCCGCCAACGgcaucgaccugggcGAAGgcaGCGCc -3'
miRNA:   3'- aUGG-CGGCGGUUGUa-------------CUUCaugCGCG- -5'
26620 5' -53.9 NC_005357.1 + 27718 0.7 0.447725
Target:  5'- gGCuCGCCGCCggUcauggacuugAUGAGGcccuCGCGCa -3'
miRNA:   3'- aUG-GCGGCGGuuG----------UACUUCau--GCGCG- -5'
26620 5' -53.9 NC_005357.1 + 27854 0.67 0.634008
Target:  5'- cGCCGCUGCUcaagAACGUGuc---CGCGCu -3'
miRNA:   3'- aUGGCGGCGG----UUGUACuucauGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 28153 0.69 0.504301
Target:  5'- cAUCGCCGaCAGCAUGGugcagcaggccaaccAGuUGCGCGUg -3'
miRNA:   3'- aUGGCGGCgGUUGUACU---------------UC-AUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 28280 0.68 0.565992
Target:  5'- gACCGCgCGCUggGACAcggcgcagaacuUGAAGaacucgGCGCGCu -3'
miRNA:   3'- aUGGCG-GCGG--UUGU------------ACUUCa-----UGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 28305 0.68 0.577239
Target:  5'- aGCCGCUgGCCGACG---AGUACG-GCg -3'
miRNA:   3'- aUGGCGG-CGGUUGUacuUCAUGCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.