Results 41 - 60 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26620 | 5' | -53.9 | NC_005357.1 | + | 6626 | 0.74 | 0.271389 |
Target: 5'- -uCCGCCGCCAGCuucgcgcgcuuggccGGAGUGucCGCGCu -3' miRNA: 3'- auGGCGGCGGUUGua-------------CUUCAU--GCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 22332 | 0.76 | 0.214812 |
Target: 5'- gUGCCGaacgCGCCGaguucuucguACAUGGAGUGCaGCGCg -3' miRNA: 3'- -AUGGCg---GCGGU----------UGUACUUCAUG-CGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 41337 | 1.11 | 0.000673 |
Target: 5'- cUACCGCCGCCAACAUGAAGUACGCGCg -3' miRNA: 3'- -AUGGCGGCGGUUGUACUUCAUGCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 13060 | 0.69 | 0.54368 |
Target: 5'- gUGCgGCCGUCuGCAUGuuGaaUugGCGCu -3' miRNA: 3'- -AUGgCGGCGGuUGUACuuC--AugCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 17444 | 0.69 | 0.54368 |
Target: 5'- gGCC-CCGCCAGCAUcGAGGccAgGUGCc -3' miRNA: 3'- aUGGcGGCGGUUGUA-CUUCa-UgCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 42117 | 0.67 | 0.611233 |
Target: 5'- gUACgGCaCGCCcugGACG-GAAGaGCGCGCc -3' miRNA: 3'- -AUGgCG-GCGG---UUGUaCUUCaUGCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 1057 | 0.67 | 0.611233 |
Target: 5'- -gUCGCCGCgAACcgGcguccAGUaACGCGCg -3' miRNA: 3'- auGGCGGCGgUUGuaCu----UCA-UGCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 19049 | 0.68 | 0.599869 |
Target: 5'- gGCCGCCGgCGGCGUcGAucaGCGUGUc -3' miRNA: 3'- aUGGCGGCgGUUGUA-CUucaUGCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 17782 | 0.68 | 0.599869 |
Target: 5'- -gUCGCgCGCgAACGgauaGAAGcGCGCGCa -3' miRNA: 3'- auGGCG-GCGgUUGUa---CUUCaUGCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 36899 | 0.68 | 0.593064 |
Target: 5'- gACCagaaGCUGCCGGCcUGGaacuaccaggcaccgAGUugGCGCu -3' miRNA: 3'- aUGG----CGGCGGUUGuACU---------------UCAugCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 5357 | 0.68 | 0.588534 |
Target: 5'- uUGgCGacaGCCAACAUGcucgacAGGUGCGUGCu -3' miRNA: 3'- -AUgGCgg-CGGUUGUAC------UUCAUGCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 36833 | 0.68 | 0.577239 |
Target: 5'- cACC-CCGCCGAgugggccaaauuCGUGGAGUAUGCcgGCc -3' miRNA: 3'- aUGGcGGCGGUU------------GUACUUCAUGCG--CG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 28280 | 0.68 | 0.565992 |
Target: 5'- gACCGCgCGCUggGACAcggcgcagaacuUGAAGaacucgGCGCGCu -3' miRNA: 3'- aUGGCG-GCGG--UUGU------------ACUUCa-----UGCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 25534 | 0.68 | 0.565992 |
Target: 5'- uUGCCGCCGCCGGCA--------GCGCc -3' miRNA: 3'- -AUGGCGGCGGUUGUacuucaugCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 12993 | 0.68 | 0.554803 |
Target: 5'- aACCGcCCGCCGuucuCGUacAGgcCGCGCa -3' miRNA: 3'- aUGGC-GGCGGUu---GUAcuUCauGCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 38809 | 0.68 | 0.554803 |
Target: 5'- uUACCaCCGCCAGC--GAAGcaaaAUGCGCg -3' miRNA: 3'- -AUGGcGGCGGUUGuaCUUCa---UGCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 38691 | 0.69 | 0.54368 |
Target: 5'- gUGCCGCCcucaucaaauccGCgAGCAUGAGcggAUGCGCc -3' miRNA: 3'- -AUGGCGG------------CGgUUGUACUUca-UGCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 35887 | 0.69 | 0.54368 |
Target: 5'- gGCUGCuacgucaaCGCCAGCAUcGAAcuGUGgGCGCa -3' miRNA: 3'- aUGGCG--------GCGGUUGUA-CUU--CAUgCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 37638 | 0.66 | 0.724109 |
Target: 5'- cAgCGCCaGCCGGCGUGc--UGgGCGCa -3' miRNA: 3'- aUgGCGG-CGGUUGUACuucAUgCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 8751 | 0.75 | 0.239459 |
Target: 5'- cGCUaCCGUCAACAUGGAauuUGCGCGCg -3' miRNA: 3'- aUGGcGGCGGUUGUACUUc--AUGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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