miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26620 5' -53.9 NC_005357.1 + 18910 0.68 0.588534
Target:  5'- --gCGCCGCCug---GAAG-GCGCGCu -3'
miRNA:   3'- augGCGGCGGuuguaCUUCaUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 18676 0.69 0.499999
Target:  5'- gGCCcgguGgCGCCGGCAUGgcGcugcUGCGCGCc -3'
miRNA:   3'- aUGG----CgGCGGUUGUACuuC----AUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 803 0.73 0.319434
Target:  5'- aAUCGCCGUCAGCAggUGGcugggcuugAGcGCGCGCa -3'
miRNA:   3'- aUGGCGGCGGUUGU--ACU---------UCaUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 14299 0.68 0.588534
Target:  5'- cUGCUGCCGcCCGACcaGgcGUAcCGCGUg -3'
miRNA:   3'- -AUGGCGGC-GGUUGuaCuuCAU-GCGCG- -5'
26620 5' -53.9 NC_005357.1 + 20004 0.73 0.311399
Target:  5'- cGCCGCCGUCAagGCGUGGcuGGcgaacgucACGCGCu -3'
miRNA:   3'- aUGGCGGCGGU--UGUACU--UCa-------UGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 40035 0.66 0.713059
Target:  5'- uUGCCGCC-CUGACAa-GGGUACGCacGCg -3'
miRNA:   3'- -AUGGCGGcGGUUGUacUUCAUGCG--CG- -5'
26620 5' -53.9 NC_005357.1 + 16671 0.72 0.344462
Target:  5'- uUGCCGCCGcCCAGCA------GCGCGCc -3'
miRNA:   3'- -AUGGCGGC-GGUUGUacuucaUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 33528 0.66 0.700806
Target:  5'- aGCgCGCCGCCGAUagcgccauucacaAUGAugccCGCGCc -3'
miRNA:   3'- aUG-GCGGCGGUUG-------------UACUucauGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 30429 0.66 0.66813
Target:  5'- cGCUGCUgGCCGACGUGGaaaAGgccaagauUGCGCa -3'
miRNA:   3'- aUGGCGG-CGGUUGUACU---UCau------GCGCG- -5'
26620 5' -53.9 NC_005357.1 + 16359 0.67 0.656776
Target:  5'- -cCCGCCccgaguucGCCGagcGCAUGGA--GCGCGCc -3'
miRNA:   3'- auGGCGG--------CGGU---UGUACUUcaUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 9156 0.67 0.634008
Target:  5'- gUGCCGCgauaGCCAGCGgugGccGUGC-CGCg -3'
miRNA:   3'- -AUGGCGg---CGGUUGUa--CuuCAUGcGCG- -5'
26620 5' -53.9 NC_005357.1 + 5363 0.67 0.634008
Target:  5'- gGCCGCCugcaccgcGCCcaggguUAUGucacuGGUGCGCGCc -3'
miRNA:   3'- aUGGCGG--------CGGuu----GUACu----UCAUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 29571 0.68 0.599869
Target:  5'- cUACaacaaGCUGaCCAACAgcccgGAcgAGUugGCGCg -3'
miRNA:   3'- -AUGg----CGGC-GGUUGUa----CU--UCAugCGCG- -5'
26620 5' -53.9 NC_005357.1 + 40271 0.68 0.577239
Target:  5'- aACUGuUCGCCAACGUGuacgGCgGCGCg -3'
miRNA:   3'- aUGGC-GGCGGUUGUACuucaUG-CGCG- -5'
26620 5' -53.9 NC_005357.1 + 24872 0.68 0.576112
Target:  5'- cACCGgCGCCGACAucauucUGAccaaucaAGUcaacgcggugGCGCGCu -3'
miRNA:   3'- aUGGCgGCGGUUGU------ACU-------UCA----------UGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 22133 0.68 0.565992
Target:  5'- gGCCGCCGagCAACccGcuacuGGUGCGgGCa -3'
miRNA:   3'- aUGGCGGCg-GUUGuaCu----UCAUGCgCG- -5'
26620 5' -53.9 NC_005357.1 + 41396 0.69 0.5097
Target:  5'- aUGCUGCCGCCGGcCGUGGccuuccaGGUguucgACGCuGCg -3'
miRNA:   3'- -AUGGCGGCGGUU-GUACU-------UCA-----UGCG-CG- -5'
26620 5' -53.9 NC_005357.1 + 41284 0.7 0.472454
Target:  5'- gACCGCCGCCGuaGCGcGAgcuaacgguuacaccGGgccgAUGCGCg -3'
miRNA:   3'- aUGGCGGCGGU--UGUaCU---------------UCa---UGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 34758 0.71 0.408168
Target:  5'- gAUCGCCGCCAAa--GAAcgGCGCGUg -3'
miRNA:   3'- aUGGCGGCGGUUguaCUUcaUGCGCG- -5'
26620 5' -53.9 NC_005357.1 + 33099 0.72 0.370869
Target:  5'- aUGCCGCCGCCcgccGCGccGAcGUGCGcCGCc -3'
miRNA:   3'- -AUGGCGGCGGu---UGUa-CUuCAUGC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.